G190232


Basic Information

Item Value
gene id G190232
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15790725 ~ 15866179 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257894
aaaatcaaagaaactcatcatttttaagtgatatcttgattttttttccagagctgttgcTCTTAAACTTTAGAAGACAGATCATATGTCTTTAGTTGGTGCAAcaattaactattattattgttcattccttaattcctctgtgatgaggagatAAAATGATAGCTTTTTTCCCCTTAACTTTCATTTGATTTTTtccccattccaccttaaacgctGCAAACTCTTCCctccatctgttgcaccatatAGGTCcataaggtggaacgggaaagttagacAGATATCTAGCTAATAAGAGATTCTTTTTGAATGActtttctaaacaaaaatgccctaaaacattgaaactacccattaaactatagtaatatagtggttatcgCAATtttaaacaaggaaaatactaaAACTTGTGggttaaagcagcataaagttatccaaaagcagtgtgtaagactggtgaagaacATGCATGAAAGATgaagatgcaagaaaactgtgattaaaaaacagggttattccaccaaatactgtttttccagtgatTCTTATTGTCCTCTCTTAGGAGTtttcctctgaaaaaaaaaaGATGATTCTCCCTGTACTGAGCTGAGTCATGCACTCTCAAGAGGGGTATCTGGGCTAAGTGGTTGGGGCAAgaggtaaaatgggattgggccctaTATGGACCGGCTACACATACCGAACAAAAagtttctctttttgttttgtttgtcttttttgctgtttcttttctctttttttaactaatgCCTTTCAATCGTTCACTCAAAACACGCAAAAACTCGAACACTGTTACCTGTGGGACGCTGGCAGTGAAGCGTTACGGAGGTGGAGAGCGGTAGAATATGGAATAAAAACGAACAgagacttttaaaaaaaacatgtttttccaCACATATCTCAACATTTTCTACCTTTTCTTTGTGTACTccgtgtgctgtgtgtgtgtgtgtgagggacgGGAGCAGTCGGGCGATGACGGGGTCGATGCTGTTTTAGCGCGGATGCTAACGTTTTGAATAGCACTTGTCTCATTTTGTAAGTATTTCTTTATGTACATTATGTAACTACGGTTTGAATTTCTCGAGATCTATTGGAGACCAATATCAGCGGTGAAGAGATTTTGCTTTGCGAGcgttttactttttctttcgtTCTTTTCTATGTGTTTCATTCGTTTTTTGGactggttttgtttgtttgtttgtttgtttgtttgttcgttctctctttctctcgtttttTTTGTACTAATCGTATGTgcaatatgtatgttttttgtttggttttgtaaACGAACAGTTGCGAACTAGtggctgttttttcttttatttcttatcataataattgtatttaattctcaacaccccccccccccctcatccCTGTCGTCACAGTCCACACCCCCCAACCCACCCTACCGACCCCAAGTGtttcgtttttttgtttgtttgtttgtttgtttgttttttgtccgtctctctctctctgttctagCGACTTGCAGTGAGAAATATCAAATTAAAAGTACTCTTGCATGTAACATTATATTGTAAGAAATATTctctaaatattgtatattCCCAGAAATGATATTATTATCAGTGTTACAGTTGACTGTTGTTGAAATTGAAGTGATGatgataaaaaacattaaaactatgtAGAATTCTaaaaaaaaaaaaaaaaaaaaaaa
>TU257895
AGAGACCCGCCCCCAAATCAGACTGAAGCACAGAGAACCCGCCCCCAAATCAGACTGAAGCACAGAGACCCGCCCCCAAATCAGACTGAGGCACAGAGACCCTCCCCCAAATCAGACTGAAGCACAGAGACCCGCCCCCAAATCAGACTGAAGCACAGAGACCCGCCCCCAAATCAGACTGAAGCACAGAGACCCGCCCCCAAATCAGAATGAGGCACAGAGACCCTCCCCCAAATCAGACTGAAGCACAGAGACCCGCCCCCAAATCAGACTGAGCACAGAGACCCGCCCCCAAATCAGACTGAAGCATAGAGACCCTCCCCCACATCAGACTGAAGCATAGAGACCCTCCCCCAAATCAGACTGAAGCACAGAGATCCGCCCCCAGATCAGACTGAGGCACAGAGACCCTCCCCCAAATCAGACTGAAGCACAGAGACCCGCCCCCAAATCAAGACTGAAGCACAGAGGACCCTCCCCCAAATCAAGACTGAAGCACAAGAGACCCGCCCCCAAATCAGACTGAAGCACAGAGACCCGCCCCCAAATCAGACTGAGGCACAGAGACCCTCCCCCAAATCAGACTGAAGCACAGAGACCCTCCCCCAAATCAGACACCCATATATGCACAGCATTTGCACAGAGAGGTTTCTAAacatcagtaaaataaaaacacctgaagaatctgctgatagtaaaaatatactttatattagtttagattagattagattagattagatgtGTTCGGAATTCTGTTCTCATTAATAAGCAATAATTATAAAACCAAATTTCTGAAGGACCAACAGTTAAGTTAGTGTAGAGTTTCTGATCTGGAATTAGTGAACAGAGAGAAACGTTCCCTGATTATTATCAGCGGTAAAATCACGGTTCTACAGTAGGATGCACCAATACGCACCACCTTTACTAAAACCACGTTTCAACACTAATTATCCAAATCTTTTAGCtccactgattagcatggtggtggtgcatgaggtgttagtgtgtgtgaatAGTTCActaaccagaaatatccagccaacagcaTCCATGTCCTATAGGCTGGCTCCTGTAGGCTGGCTCCATGTCCTGTTGGATACGTCCTGTGGGCATTATCCTGTTGGCAACATCCGATAGGCTGGATGCGGTGTCCTGTGGGCTGCTTTCTGTAGGCTGTGTCCTAAGGGGTGACTTCTGAGAACTTTGCCCGCATcatgtgggcagtgtcctgtgtaTGGCGTCCTGTGGGCTGCACCCTATGGGCACTGTCCGCATCCAGTGTACAGCGTCCATGTCCTGTAGGAATTATCCTGTGGGCTACGTTTGCATCCCATAGGCTGCGTCTGCATCCCGTAGGCTGAGTctgcatcctgtgggcagtgtcctgtatgCTGCATCCTGTAGCCTGCATTTGCATCGTGTAGGCTGCGTCTGCTCCCtgaaggcagcatcctgtgggctgtGTCTATGTCCTGTAGGCTGCATCTTGTAGGTAGTGTCtgtatcctgtgggcagtgttctcTGGGCTGCATCTACGTCCTATGGGCAGTGTCCACATCCAGTGGACAGAAATGTCCTGTAGGATGCATCCTGTAGGCTACGTTTACATACTGTAGGCTGCGTCTGCACCTTGTGGGCAGTCTCCTGTATgctgcatcctgtgggcagcatcctgtagacagtgtcctgtaggctgTGTCTGCTCCCTAAAGGCAGGACACAGCATTGTAGGCAGTCTACTTTATTGTAGACTGCATCTTGTAGGCAGTGTCTGTGTCCTGTAGGCTGAGTTCTATGGGAAGTTTCCTGTAGGCTGTGTCCGGCGTTTACATCCTGAGGGCAACATCCTGTGGGCTTTGTCCATGTCCTGTAGAGTTGCATATGCATCTTATAGGTTGCATCTGTACCCCGTGGGCTTTGTCCACGTCCTGTAGGCTGTGTCCTGTAGGAACTACAGTCTggaattatagaactacaaagtgtcctatgCCTGATCAATGGAGCTGATAAAACTGGATAATAAAGGTGTAAAAAacaaggtggtcataatgttacaGCTAATGTTACAGTGCTCAGCACTGCCACCCAGTGTCTGATTTAAACACTGcatcaaatatttatatataaacctgCACCAAAACAAACCCTGCAGTTTAGTTTTAGGAAATGAAGTTAGAGATTAGGGATCAGGgtttagggtttatGGATTAGGGGTATAGTCAGCATAGCTGagagtgaaaatgtgaaacatcTGGAAACATCTGCCAGAGATTTCCAGAgtttaactgaactgaattgaatcTGCAGCAGCAACTTCACCTGAATGTATTTCAGCACACTGTCTGAGCCATTTACTACGTGATTAATgtttaaatctgtgttattCAGAGAAATAGCTCactgtagtgtatgtgtgtttacagagtgtgtgtgtgtgtgtgtgtgtgtatctgtatctgtaataataagctgtatattttttggtgtgtgtgttgtgcagtaCATGTGTAAACATAAtgtaaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcagtctcGCAGGTTGTTTCACTGAGAGTCTATTTGTAAAGCTATATTTTGTTAACAAgaacaataattataataataacaacaatactaagaacaataataacagataataatagataataaaaacTCAAACTGAATGTCACTATAAACATTTTACGAAGAACAGTTTTCTCACTGTGTGTgcgtaagagtgtgtgtaagagagagagagattaagacagtgtgtgtgtgtgtgtgtgtgtgtgtgttagacagCAATATGTAAATATCCAGATTCACTAGCAGTTGATCCAGCTGAGCTGAATGTGAGTTTTAAGAGCTTCAACACTTTTATGGTTGTAAAGTATAACTATGGAAAACTGTCAGTAATAAAGTCAATGTATCACAAAATCATCAATAAAGGATGTTAAAGCTtaaaaaaaaaaaaaaaaaaaaaaa
>TU257909
TTAAACTTTAGAAGACAGATCATATGTCTTTAGTTGGTGCAAcaattaactattattattgttcattccttaattcctctgtgatgaggagatAAAATGATAGCTTTTTTCCCCTTAACTTTCATTTGATTTTTtccccattccaccttaaacgctGCAAACTCTTCCctccatctgttgcaccatatAGGTCcataaggtggaacgggaaagttagacAGATATCTAGCTAATAAGAGATTCTTTTTGAATGActtttctaaacaaaaatgccctaaaacattgaaactacccattaaactatagtaatatagtggttatcgCAATtttaaacaaggaaaatactaaAACTTGTGggttaaagcagcataaagttatccaaaagcagtgtgtaagactggtgaagaacATGCATGAAAGATgaagatgcaagaaaactgtgattaaaaaacagggttattccaccaaatactgtttttccagtgatTCTTATTGTCCTCTCTTAGGAGTtttcctctgaaaaaaaaaaGATGATTCTCCCTGTACTGAGCTGAGTCATGCACTCTCAAGAGGGGTATCTGGGCTAAGTGGTTGGGGCAAgaggtaaaatgggattgggccctaTATGGACCGGCTACACATACCGAACAAAAagtttctctttttgttttgtttgtcttttttgctgtttcttttctctttttttaactaatgCCTTTCAATCGTTCACTCAAAACACGCAAAAACTCGAACACTGTTACCTGTGGGACGCTGGCAGTGAAGCGTTACGGAGGTGGAGAGCGGTAGAATATGGAATAAAAACGAACAgagacttttaaaaaaaacatgtttttccaCACATATCTCAACATTTTCTACCTTTTCTTTGTGTACTccgtgtgctgtgtgtgtgtgtgtgagggacgGGAGCAGTCGGGCGATGACGGGGTCGATGCTGTTTTAGCGCGGATGCTAACGTTTTGAATAGCACTTGTCTCATTTTGTAAGTATTTCTTTATGTACATTATGTAACTACGGTTTGAATTTCTCGAGATCTATTGGAGACCAATATCAGCGGTGAAGAGATTTTGCTTTGCGAGcgttttactttttctttcgtTCTTTTCTATGTGTTTCATTCGTTTTTTGGactggttttgtttgtttgtttgtttgtttgtttgttcgttctctctttctctcgtttttTTTGTACTAATCGTATGTgcaatatgtatgttttttgtttggttttgtaaACGAACAGTTGCGAACTAGtggctgttttttcttttatttcttatcataataattgtatttaattctcaacaccccccccccccctcatccCTGTCGTCACAGTCCACACCCCCCAACCCACCCTACCGACCCCAAGTGtttcgtttttttgtttgtttgtttgtttgtttgttttttgtccgtctctctctctctgttctagCGACTTGCAGTGAGAAATATCAAATTAAAAGTACTCTTGCATGTAACATTATATTGTAAGAAATATTctctaaatattgtatattCCCAGAAATGATATTATTATCAGTGTTACAGTTGACTGTTGTTGAAATTGAAGTGATGatgataaaaaacattaaaactatgtAGAATTCTCTTCATGCGACTCGTCTTTTCATCT

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU257894 False 1723 lncRNA 0.36 3 15790725 15866179
TU257895 True 3006 lncRNA 0.45 5 15790725 15813783
TU257909 False 1663 lncRNA 0.37 2 15864316 15866117

Neighbor

gene id symbol gene type direction distance location
acad9 acad9,LOC107749438,LOC107566791,LOC107551129 coding downstream 6071 15765883 ~ 15784654 (-)
efcc1 efcc1,LOC107581369 coding downstream 29123 15723299 ~ 15761602 (-)
ppcs ppcs,LOC107685733,LOC107565714,LOC107551114,LOC107749447,LOC107691385 coding downstream 266552 15519665 ~ 15524173 (-)
rbm12 rbm12,LOC108424674,LOC107685660,LOC107749443,LOC107551121,LOC107581359 coding downstream 286334 15495710 ~ 15504391 (-)
LOC103034615 LOC108424674,LOC108254857,LOC107685660,LOC107749446,LOC107727818,LOC107691350,LOC105912234 coding downstream 287077 15468213 ~ 15503648 (-)
LOC103029523 iqsec1b,iqsec1,LOC108424663,LOC107691341,LOC107551128 coding upstream 2956 15869135 ~ 16138293 (-)
wnt7a wnt7a,wnt7aa,LOC108424657,LOC107749431,LOC107685644,LOC107727836 coding upstream 654365 16520544 ~ 16556758 (-)
phf2 phf2 coding upstream 873108 16739287 ~ 16794230 (-)
fam120a fam120a,LOC107685640,LOC107691381 coding upstream 930689 16796868 ~ 16827437 (-)
cstf1 cstf1 coding upstream 1009229 16875408 ~ 16884596 (-)
G190204 NA non-coding downstream 182820 15597327 ~ 15607905 (-)
G190199 NA non-coding downstream 221454 15556521 ~ 15569271 (-)
G190183 NA non-coding downstream 339155 15388095 ~ 15451570 (-)
G190171 NA non-coding downstream 436093 15353437 ~ 15354632 (-)
G190004 NA non-coding downstream 573375 15215638 ~ 15217350 (-)
G190252 NA non-coding upstream 42856 15909035 ~ 15909528 (-)
G190257 NA non-coding upstream 100316 15966495 ~ 15969045 (-)
G190265 NA non-coding upstream 129017 15995196 ~ 16002227 (-)
G190268 NA non-coding upstream 136085 16002264 ~ 16043340 (-)
G190234 NA non-coding upstream 148088 16014267 ~ 16016150 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 324141 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 468550 15318643 ~ 15322175 (-)
tsen2 NA other downstream 2713983 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 3076693 12612611 ~ 12714032 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 479522 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 703444 16569623 ~ 16599317 (-)
cass4 NA other upstream 967671 16833850 ~ 16869461 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 1314935 17181114 ~ 17193747 (-)
G190788 NA other upstream 1351142 17217321 ~ 17219780 (-)

Expression


Co-expression Network