G190257


Basic Information

Item Value
gene id G190257
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15966495 ~ 15969045 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257962
taacagcacattcacactttcatcatctaataactagaaaaagactgTAGAGAACTCTACAGTAAAATCTATTTATAGTAGTTTTAAAGTCTTTactttaaagaaattacagatacataagccagagagcggtgagtactgtttctacaccttcaaataaagactcttagaaactggagttaaaaaaactgctacaggaagacgtctggctgacccacatggaaacagcagctttagcctttagctcagattaacatgattaaagaagaagaagaagaattagagttaatctgacaggagaagaagaactgcagtaataaaattcattaataaaataaagataaaatataaaagcagaTTGAACTTCTAAACTATTGGggttttctaaaatcttaatttttttttctccaccccACGTAAAGCTGATCTCATAGCCATGTTCCTCTGGGCTTTTTCCCTCAGAGTGACTCAACTCTGGACCCGAACACACCCCGAATCACAGCTCAACACTTCCACATTACAAATCCATCACAATGTTGCCAGATCCAGATGTTTTAAGCTTATTAAGGCTGATTATATCAGGCCACGTGTCGTATCTCAGACGCTGAACTGAACTCTGAACACTCCTGGCCTCATGCTCTGCTGGGAGTCCGGTCACACTTGGCCATGTTCTTGGATGCAGATCTCTGCCAAACCTCCCCCAAACACAAAGGAAATGAAACCCAAACAGATGATAACGGCTGAAATGAGAAAAACTGGAAAAAGTGAATTTTCTTGTTCAGAGGGAAAGTTTTAAAGCGTAGGATGCAGTTGATTAAAACCTCTGAGATGCTTCTTTCCATTACAACACTTTAGTTTGTTTGTCTGCTTGGGATGCTTTGTAGATTCTTAGTgttggacaaaatattgatatatcaatgtataatttttgtttacgatacattatcaatatggggcatcaaatatggatattttttatGACACATTGGCAATCTTAACCTTAACACAAGACCGAACTATGTCCATATTCTCAACTTAAGACCTGATCATAACCTTAATTCAAGACCGAAACATCACCTCAACTCAAGGCAGAACCGTAATTTCAGCTCAAGACCGAGCTACATTCTCAACTTAAGGCCAAACCGTTACCTCAACTCAAGATTGAACCATAACCTCAACTCAAGGCCCGAACCATATTCTCAACACAAGACCGAAAGTAACCTCAACTCAAGACCGAACCATAACCTCAATTTAAGATTGAACCATGACCTCAACTCAAGATTGAACCGTAACCTCAACTCAAGACCGAAAAATAACCTCAACTCAAGATTGAACCATAACCTCAACTCAAGATTGAACCATGACCTCAACTCAAGATTGAACCGTAACCTCAACTCAAGACCGAAAAATAACCTCAACTCAAGATTGAACCATAACCTCAACTCAAGATTGAGCCATAACCTCAACTCAAGACCGAACTTTAAACTCAACTCAAGATTCAACCATAACCTCAACTCAAGACCAAACCATCATTTTTGCACAAGACTGAACCATATTCTTAACACAAGACCGAACCATAACCTCAACTCAAGGCCAAAACCGTAACCTCAACTCAAGACCGAACTGTAACCTCAAATCAAGATGGAACCATAGTTTTAACTCGAGAGCGAACCATAACCTCAACTCGAAACCAAATCATATCCTTAACTCAAGACCAAACCGTAACCTCAACTCAGGACTGAACCATAACCTTAACTCAAGATTGAACCGTAACCTCAACTCAAGACCAAACCATAATTTTAGCACAAGACTGAACCATATTCTTAACACAAGACTGAACCATATTCTTAACACAAGACCAAACCATAACCTCAACTCAAGGCCAAACCGTAACCTCAACTCAAGACCGAACTGTAACCTCAATTCAAAGAACTCATTGAGAACTCAAGAGCGAACCATAGCCTCAACTCAAAACCAAATCATATCCTTAACTTAAGACCAAACCGTAACCTTGACTCAGGACTGAACCATAACCTTAACTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257962 True 2044 lncRNA 0.39 3 15966495 15969045

Neighbor

gene id symbol gene type direction distance location
LOC103030277 LOC108415871 coding downstream 115304 15846861 ~ 15851191 (-)
LOC103047460 NA coding downstream 132774 15832088 ~ 15833721 (-)
LOC103030908 LOC103362890,LOC104939527,LOC101063010 coding downstream 141256 15814220 ~ 15825239 (-)
acad9 acad9,LOC107749438,LOC107566791,LOC107551129 coding downstream 181841 15765883 ~ 15784654 (-)
efcc1 efcc1,LOC107581369 coding downstream 204893 15723299 ~ 15761602 (-)
wnt7a wnt7a,wnt7aa,LOC108424657,LOC107749431,LOC107685644,LOC107727836 coding upstream 551499 16520544 ~ 16556758 (-)
phf2 phf2 coding upstream 770242 16739287 ~ 16794230 (-)
fam120a fam120a,LOC107685640,LOC107691381 coding upstream 827823 16796868 ~ 16827437 (-)
cstf1 cstf1 coding upstream 906363 16875408 ~ 16884596 (-)
LOC103036783 NA coding upstream 917666 16886711 ~ 16954694 (-)
G190252 NA non-coding downstream 56967 15909035 ~ 15909528 (-)
G190232 NA non-coding downstream 100316 15790725 ~ 15866179 (-)
G190214 NA non-coding downstream 167738 15718099 ~ 15798757 (-)
G190204 NA non-coding downstream 358590 15597327 ~ 15607905 (-)
G190199 NA non-coding downstream 397224 15556521 ~ 15569271 (-)
G190265 NA non-coding upstream 26151 15995196 ~ 16002227 (-)
G190268 NA non-coding upstream 33219 16002264 ~ 16043340 (-)
G190234 NA non-coding upstream 45222 16014267 ~ 16016150 (-)
G190287 NA non-coding upstream 81040 16050085 ~ 16075172 (-)
G190290 NA non-coding upstream 109971 16079016 ~ 16116363 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 499911 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 644320 15318643 ~ 15322175 (-)
tsen2 NA other downstream 2889753 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 3252463 12612611 ~ 12714032 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 376656 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 600578 16569623 ~ 16599317 (-)
cass4 NA other upstream 864805 16833850 ~ 16869461 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 1212069 17181114 ~ 17193747 (-)
G190788 NA other upstream 1248276 17217321 ~ 17219780 (-)

Expression


Co-expression Network