G190304


Basic Information

Item Value
gene id G190304
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16202590 ~ 16297324 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258012
CTCTCTCTTATTGAGATCCTGATGTGAAGTCTTTAATGGAAGACCTCTGATCAAGGATGGAGGCCTGAGTGTTTTCAGGATGGCGGACGTTTTTAAATCCCTCTACTGGAAGCTCACATTGGAAACTGCTGCACTGTAGAGTCAACACGTTGGTTCTTCGAGGATCATCAGaAATCTGCAGTATGATCATCACAGTAGAAGCCCCAGTAGAAGCAACCTCCGCCCCTGAGGCAGCTGTGAGGAACACCACACAAGGACGCTGCCAGACGCTTCTCTGCAGGCGGACGAGGCTGGCAGTCAATTAGCAGCGCGGGAGGCCGGCGCGCGAGAGCAGCCTGACGGGAGGGTAATTACACTCTCCgcctgagagacagagagaaactcCCCACCACCTCCAACACAGAGCACGCAGGTTGCCGTCGCTTCTGCCAACGAGGGGCTCAAAACGGCCCTTCACTCTCACTTCACCACAGCTCACAAACTCACTTTCACAAACTGCTtcataaaaacactgtaaaactccCCACGAATCTCCAAACCAGCGGCCCACGAATCTCCAAACCATCGGCCCACGGATCTCCAAACCAGCGGCCCACGGATCTCCAAACCATCGGCCCACGGATCTCCAAACCATCGGCCCACGGATCTCCAAACCAGTGGCCCACGGATCTCCAAACCAGCGGCCCACGGATCTCCAAACCATCGGCCCACGGATCTCCAAACCAGCGGCCCACGGATCTCCAAACCATCGGCCCACGGATCTCCAAACCATCGGCCACGGATCTCCAAACCATCGGCCCACGATCTCCAAACCATCGCCCACGGATCTCCAAACCATCGGCCCACGGATCTCCAAACAGCGGCCCACGGATCTCCAAACCAGCGGCCCACGGATCTCAAACCATCGGCCCACGGATCTCCAAACCAGTGGCCCACGGATCTCCAAACAGCGGCCCACGGATCTCCAAACCATCGGCCCACAGATCTCCAAACCATCGGCCCACGGATCTCCAAACCATCGGCCCACGGATCTCCAAACCATCGGCCCACGGATCTCCAAACCATCGGCCCACGGATCTCCAAACCATCGGCCCACggatctccaaaccatcaaCTATCGACTCTTATTTTGAGGAGCTTCTGGTCCCTCCAGGTGATGCTTCACCTGTAATGTTAGCATGTTTTAATCACAAGCTCCTCCACTTGTCCGTGCGAAGTCTAACTGTtgtgtttaaagtaaaaaaaatattttgttcagaacatttccagtgttttatattcttaaacattgttaattatattagagtagacggGGAGAttggttcttaataaacatttatttatattaaataataggtctatgcttcttcagtgttgcaatgttaattgtcatcattctgaacagattttgctcattctaacagcctgaaaatgattttaaaaagctcaggtTTTAATCACTTATacttactaaaataatgttgggtttaaatcaggctcaggCTCGTAAAACACTTTATGAGGCAGTGCAGGCGGGGTCAAGCTgcatttttttgggcccgatctgaGCTCTAGTAGTGTTATAAAGagtttttggtgtgtgtgtgtgtgtgttagtgttagttaAAGAGACGTACCATGATGGTTCCTCCGGTCTGGATGCGTAACGGTCTCAGCACTTTCCTCTGCACCAGAAAATTGGGCAGAAATATAAGAGGAGGGATTTCTGTGATGGTGGCAACCACTAAAGACCACTGTAaacagattaaaacacaaacacacacttaaaaacGTGCTTAAAACGTGTTAATTATCATTATAATTATCAGTAATCAGTTATATCAATCACAGTTTCTCTCTTCAATCTatcaaaaaaatactgtaatattattatttacagtaaacaacaacaaataggGACAAAAATGCACCAGTGAGACAAAAACCAAAGCAGAACACAAACACCAGCTTAACTTCAGCGAGATCCTGAGTTCAGTTCCCCAGAAACGTTGTAGAGTTAAGATCACTTTACCTGTATTAAAGCTATTTTTGTGTTATAAAACTTTtactgaacattttcttttgtttttgcttttttttttggtcataatTGCATTTTTAGATTATCAATCTGGAATCTAGGAtcactgaattatttttaacttttagtttCCAATCACCATaagaaagcctgtgactgttttaaatttttctttttatttcaattatttatataatttatctattttattttatatatttgtatttatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258012 True 2271 lncRNA 0.45 4 16202590 16297324

Neighbor

gene id symbol gene type direction distance location
LOC103029523 iqsec1b,iqsec1,LOC108424663,LOC107691341,LOC107551128 coding downstream 64297 15869135 ~ 16138293 (-)
LOC103030277 LOC108415871 coding downstream 351399 15846861 ~ 15851191 (-)
LOC103047460 NA coding downstream 368869 15832088 ~ 15833721 (-)
LOC103030908 LOC103362890,LOC104939527,LOC101063010 coding downstream 377351 15814220 ~ 15825239 (-)
acad9 acad9,LOC107749438,LOC107566791,LOC107551129 coding downstream 417936 15765883 ~ 15784654 (-)
wnt7a wnt7a,wnt7aa,LOC108424657,LOC107749431,LOC107685644,LOC107727836 coding upstream 223220 16520544 ~ 16556758 (-)
phf2 phf2 coding upstream 441963 16739287 ~ 16794230 (-)
fam120a fam120a,LOC107685640,LOC107691381 coding upstream 499544 16796868 ~ 16827437 (-)
cstf1 cstf1 coding upstream 578084 16875408 ~ 16884596 (-)
LOC103036783 NA coding upstream 589387 16886711 ~ 16954694 (-)
G190297 NA non-coding downstream 25291 16158389 ~ 16177299 (-)
G190290 NA non-coding downstream 86227 16079016 ~ 16116363 (-)
G190287 NA non-coding downstream 127418 16050085 ~ 16075172 (-)
G190268 NA non-coding downstream 159250 16002264 ~ 16043340 (-)
G190234 NA non-coding downstream 186440 16014267 ~ 16016150 (-)
G190312 NA non-coding upstream 1420 16298744 ~ 16298965 (-)
G190401 NA non-coding upstream 5562 16302886 ~ 16320394 (-)
LOC111195386 NA non-coding upstream 7394 16304718 ~ 16398029 (-)
G190400 NA non-coding upstream 11943 16309267 ~ 16328181 (-)
G190416 NA non-coding upstream 159213 16456537 ~ 16485537 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 736006 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 880415 15318643 ~ 15322175 (-)
tsen2 NA other downstream 3125848 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 3488558 12612611 ~ 12714032 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 48377 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 272299 16569623 ~ 16599317 (-)
cass4 NA other upstream 536526 16833850 ~ 16869461 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 883790 17181114 ~ 17193747 (-)
G190788 NA other upstream 919997 17217321 ~ 17219780 (-)

Expression


Co-expression Network