G190420


Basic Information

Item Value
gene id G190420
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16516334 ~ 16565626 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258158
tctttaattttaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgacaagggttattccaccaaatattgatttctgaac
>TU258159
tctttaattttaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgacaagggttattccaccaaatattgatttctgaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258158 True 203 lncRNA 0.37 2 16516334 16565626
TU258159 False 203 lncRNA 0.37 2 16526885 16565626

Neighbor

gene id symbol gene type direction distance location
LOC103029523 iqsec1b,iqsec1,LOC108424663,LOC107691341,LOC107551128 coding downstream 378041 15869135 ~ 16138293 (-)
LOC103030277 LOC108415871 coding downstream 665143 15846861 ~ 15851191 (-)
LOC103047460 NA coding downstream 682613 15832088 ~ 15833721 (-)
LOC103030908 LOC103362890,LOC104939527,LOC101063010 coding downstream 691095 15814220 ~ 15825239 (-)
acad9 acad9,LOC107749438,LOC107566791,LOC107551129 coding downstream 731680 15765883 ~ 15784654 (-)
phf2 phf2 coding upstream 173661 16739287 ~ 16794230 (-)
fam120a fam120a,LOC107685640,LOC107691381 coding upstream 231242 16796868 ~ 16827437 (-)
cstf1 cstf1 coding upstream 309782 16875408 ~ 16884596 (-)
LOC103036783 NA coding upstream 321085 16886711 ~ 16954694 (-)
LOC103037092 ece1,LOC107727859,LOC107691323,LOC108255065,LOC107749422,LOC106582992 coding upstream 400590 16966216 ~ 17007699 (-)
G190416 NA non-coding downstream 30797 16456537 ~ 16485537 (-)
LOC111195386 NA non-coding downstream 118305 16304718 ~ 16398029 (-)
G190400 NA non-coding downstream 188153 16309267 ~ 16328181 (-)
G190401 NA non-coding downstream 195940 16302886 ~ 16320394 (-)
G190312 NA non-coding downstream 217369 16298744 ~ 16298965 (-)
G190430 NA non-coding upstream 92595 16658221 ~ 16658494 (-)
G190433 NA non-coding upstream 120530 16686156 ~ 16686622 (-)
G190434 NA non-coding upstream 126203 16691829 ~ 16748387 (-)
G190435 NA non-coding upstream 140252 16705878 ~ 16722660 (-)
G190444 NA non-coding upstream 227254 16792880 ~ 16793587 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 55406 16345701 ~ 16460928 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 1049750 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 1194159 15318643 ~ 15322175 (-)
tsen2 NA other downstream 3439592 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 3802302 12612611 ~ 12714032 (-)
ptpdc1 NA other upstream 3997 16569623 ~ 16599317 (-)
cass4 NA other upstream 268224 16833850 ~ 16869461 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 615488 17181114 ~ 17193747 (-)
G190788 NA other upstream 651695 17217321 ~ 17219780 (-)
mrpl20 mrpl20 other upstream 1573737 18139363 ~ 18213530 (-)

Expression


Co-expression Network