G190434


Basic Information

Item Value
gene id G190434
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16691829 ~ 16748387 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258174
CTGTTTATTCCGCATGGAAGAGCTTCCAGAATCCTCTCTTTGAGTTCAGTTCCAGTGAAGTACTTTTTCAGCTGTGCTCCGCTTGTGAACCCCGTCCAAAAACAGCAGGACCATTAGTAGCATGTTAATAATCCATTATCctgctttttaaactgttgttttaaatgctttttgatCTGATACCCTAATCACTCATTAGCAGCACGCACACTCGCCATCCAGATCATGCTACTCCAGTGTTTTATCAGGCGGGAATTCTTCTCTACTGTAAACACTGGGGTTTTTTGGGTCGAGATAATTGTTGGAAATTGCATGTTCTCTATAATGCTGAAGATCAAAGACTGAAGGTGCAGCTCGAGACCAAACAGCTGCATCACATCTGTCCAACTCTGAGCCGCTGCACCATCAGAAAATTCCTAATTCTACAGTTTATAGAGTGTAAATATGCATGTGGAGATGAGCATtagatatatatacatttctcccaaattcccccaaaaacctaaaaatattctcatttagagcatttatttccagaaaatgagaaatgtctaaattaaaaaaaaagcagagctttcagacctcaaataatgcaaaaaaaaaaaagtttatatacataaagttttaagagttcagatttggttttaatttcatgcatcttggcatcatgttctcctccaccagtcttacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258174 True 693 lncRNA 0.38 2 16691829 16748387

Neighbor

gene id symbol gene type direction distance location
wnt7a wnt7a,wnt7aa,LOC108424657,LOC107749431,LOC107685644,LOC107727836 coding downstream 135071 16520544 ~ 16556758 (-)
LOC103029523 iqsec1b,iqsec1,LOC108424663,LOC107691341,LOC107551128 coding downstream 553536 15869135 ~ 16138293 (-)
LOC103030277 LOC108415871 coding downstream 840638 15846861 ~ 15851191 (-)
LOC103047460 NA coding downstream 858108 15832088 ~ 15833721 (-)
LOC103030908 LOC103362890,LOC104939527,LOC101063010 coding downstream 866590 15814220 ~ 15825239 (-)
fam120a fam120a,LOC107685640,LOC107691381 coding upstream 48481 16796868 ~ 16827437 (-)
cstf1 cstf1 coding upstream 127021 16875408 ~ 16884596 (-)
LOC103036783 NA coding upstream 138324 16886711 ~ 16954694 (-)
LOC103037092 ece1,LOC107727859,LOC107691323,LOC108255065,LOC107749422,LOC106582992 coding upstream 217829 16966216 ~ 17007699 (-)
strip1 strip1,LOC106565664 coding upstream 362284 17110671 ~ 17123621 (-)
G190433 NA non-coding downstream 5207 16686156 ~ 16686622 (-)
G190430 NA non-coding downstream 33335 16658221 ~ 16658494 (-)
LOC111195385 NA non-coding downstream 125824 16560501 ~ 16566005 (-)
G190420 NA non-coding downstream 126203 16516334 ~ 16565626 (-)
G190421 NA non-coding downstream 138617 16516760 ~ 16553212 (-)
G190444 NA non-coding upstream 44493 16792880 ~ 16793587 (-)
G190446 NA non-coding upstream 70414 16818801 ~ 16819610 (-)
G190449 NA non-coding upstream 89236 16837623 ~ 16944365 (-)
G190453 NA non-coding upstream 164607 16912994 ~ 16953947 (-)
G190750 NA non-coding upstream 208774 16957161 ~ 16958432 (-)
ptpdc1 NA other downstream 92512 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 230901 16345701 ~ 16460928 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 1225245 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 1369654 15318643 ~ 15322175 (-)
tsen2 NA other downstream 3615087 13062799 ~ 13076742 (-)
cass4 NA other upstream 85463 16833850 ~ 16869461 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 432727 17181114 ~ 17193747 (-)
G190788 NA other upstream 468934 17217321 ~ 17219780 (-)
mrpl20 mrpl20 other upstream 1390976 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 1418853 18167240 ~ 18176164 (-)

Expression


Co-expression Network