G190453


Basic Information

Item Value
gene id G190453
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16912994 ~ 16953947 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258207
tgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgt
>TU258208
gtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258207 True 583 lncRNA 0.50 3 16945476 16953947
TU258208 False 245 lncRNA 0.50 3 16912994 16947073

Neighbor

gene id symbol gene type direction distance location
cstf1 cstf1 coding downstream 28398 16875408 ~ 16884596 (-)
fam120a fam120a,LOC107685640,LOC107691381 coding downstream 85557 16796868 ~ 16827437 (-)
phf2 phf2 coding downstream 118764 16739287 ~ 16794230 (-)
wnt7a wnt7a,wnt7aa,LOC108424657,LOC107749431,LOC107685644,LOC107727836 coding downstream 356236 16520544 ~ 16556758 (-)
LOC103029523 iqsec1b,iqsec1,LOC108424663,LOC107691341,LOC107551128 coding downstream 774701 15869135 ~ 16138293 (-)
LOC103037092 ece1,LOC107727859,LOC107691323,LOC108255065,LOC107749422,LOC106582992 coding upstream 12269 16966216 ~ 17007699 (-)
strip1 strip1,LOC106565664 coding upstream 156724 17110671 ~ 17123621 (-)
LOC103038379 LOC107662820,LOC103362894 coding upstream 177394 17131341 ~ 17158655 (-)
LOC111195389 NA coding upstream 208869 17162816 ~ 17178813 (-)
wdr77 wdr77 coding upstream 271731 17225678 ~ 17234938 (-)
G190446 NA non-coding downstream 93384 16818801 ~ 16819610 (-)
G190444 NA non-coding downstream 119407 16792880 ~ 16793587 (-)
G190434 NA non-coding downstream 164607 16691829 ~ 16748387 (-)
G190435 NA non-coding downstream 190334 16705878 ~ 16722660 (-)
G190433 NA non-coding downstream 226372 16686156 ~ 16686622 (-)
G190750 NA non-coding upstream 3214 16957161 ~ 16958432 (-)
G190751 NA non-coding upstream 4787 16958734 ~ 16959355 (-)
LOC111195388 NA non-coding upstream 9948 16963895 ~ 16966069 (-)
G190754 NA non-coding upstream 39401 16993348 ~ 17044008 (-)
G190756 NA non-coding upstream 45632 16999579 ~ 17020436 (-)
cass4 NA other downstream 43533 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 313677 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 452066 16345701 ~ 16460928 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 1446410 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 1590819 15318643 ~ 15322175 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 227167 17181114 ~ 17193747 (-)
G190788 NA other upstream 263374 17217321 ~ 17219780 (-)
mrpl20 mrpl20 other upstream 1185416 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 1213293 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 1357505 18311452 ~ 18315337 (-)

Expression


Co-expression Network