G72114


Basic Information

Item Value
gene id G72114
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5167522 ~ 5168375 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU82257
TGTCATACACATTAAGAATAACGGGTTCATTTGCCATCCTGAGAGAGAAGCGCTCGGTCCCTTAAAATAACGGGCGTTTATTGCTCTCGAGATAGCTGCCCCCTCGCGCACCCGGGTTTCGGATCCAAAGAAGATTAAAACACACAGCAAAGTCGCTACACCAACATCCAAAAGACCAAAACACTATATAAATGATCCACTCTTGTCATTTTATCCATCAGAGAGTCATTCTGTGAGATGTTTAGTTGGGCTCGCGGGCCTGGTCGCGTTACTAAACGAGAAACAGCGGCTGCAGAGGTAGGCACGGACGAGGAAAGGCAACAGGGCATCGGTTTCCATCAATGGTGAATCTAGCGAGAGAAAACAGGCACTTGTGGCCTCCCAGTGCGCAGCGCGCGGACAGTCTCCGGTAAGCGCGAGGGGAAGAGAGCACAGGCACCGAATACGACCGGTTTTTCACCGGTTTTCAATGGTAGACACTAAACAAAAAAGTCCTGAAAGGGCGCAGATGATAAGTGATGCACAACGACTGGCTGTCAGTCAAATCAGGAGTTTGAATTCCAGTTAAGATGACCAATATTCCATATAGAATGTTGCTGTAAAGAAGCGCGCGCTCGCGCGTGTTTCGATTGCACTGGTTGTCTGACCGCAGGGGTAGCAGATGTGATGTCGAAGGGAGCTTGGTGCAGTCCCGACCCCAACAGCCATCAGCGCCGCAGTCCCGGGGTTTGTCCTCATGGAGGCCGCGCTGAGCAGCACGGACGCGGGGTTAAATTCCTAAACACGGTTCACTGTATCGATGATGACATCACTCTACCCGGGTCGCGAGCGCGAGGAATCTAGTGTGCACTAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU82257 True 854 lncRNA 0.52 1 5167522 5168375

Neighbor

gene id symbol gene type direction distance location
CI01000012_05131253_05139664 CNIH1, MGC85215, CNIH1.S coding downstream 27847 5131030 ~ 5139675 (-)
CI01000012_05118797_05123143 NA coding downstream 44379 5118332 ~ 5123143 (-)
CI01000012_05112839_05116264 NA coding downstream 51258 5111405 ~ 5116264 (-)
CI01000012_05091184_05092014 NA coding downstream 75508 5091021 ~ 5092014 (-)
CI01000012_05079456_05083333 ATP5S coding downstream 84189 5079247 ~ 5083333 (-)
CI01000012_05414096_05416676 TTC9 coding upstream 244994 5413369 ~ 5416780 (-)
CI01000012_05568600_05606181 NA coding upstream 400225 5568600 ~ 5606181 (-)
CI01000012_05609848_05631772 NA coding upstream 440458 5608833 ~ 5631932 (-)
CI01000012_05672517_05674075 NA coding upstream 503854 5672229 ~ 5675834 (-)
CI01000012_05680930_05690904 KCNK1B, KCNK1 coding upstream 511662 5680037 ~ 5690904 (-)
G72174 NA non-coding downstream 98652 5067762 ~ 5068870 (-)
G72087 NA non-coding downstream 158825 5006622 ~ 5008697 (-)
G72078 NA non-coding downstream 190596 4966750 ~ 4976926 (-)
G72099 NA non-coding downstream 201172 4958706 ~ 4966350 (-)
G72141 NA non-coding downstream 250853 4916436 ~ 4916669 (-)
G72111 NA non-coding upstream 5746 5174121 ~ 5174733 (-)
G72073 NA non-coding upstream 9207 5177582 ~ 5181057 (-)
G72208 NA non-coding upstream 64989 5233364 ~ 5234207 (-)
G72229 NA non-coding upstream 144853 5313228 ~ 5313478 (-)
G72232 NA non-coding upstream 150853 5319228 ~ 5319443 (-)
G72068 NA other downstream 387390 4776220 ~ 4780132 (-)
G71898 NA other downstream 632850 4533530 ~ 4534672 (-)
G70774 NA other downstream 2300630 2866508 ~ 2866892 (-)
G69562 NA other downstream 3791224 1332075 ~ 1376298 (-)
CI01000012_01139864_01192154 TTC7A other downstream 4016324 1135676 ~ 1192154 (-)
G72204 NA other upstream 125398 5293773 ~ 5302206 (-)
G72294 NA other upstream 294465 5462840 ~ 5465857 (-)
G72629 NA other upstream 978636 6147011 ~ 6147494 (-)
CI01000012_07356934_07358497 NA other upstream 2186877 7356863 ~ 7358612 (-)

Expression


Co-expression Network