G190783


Basic Information

Item Value
gene id G190783
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17125493 ~ 17131135 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258695
tctctctctgtctctctctttttctttgatattatctttctctttcatctctttacttctctctgtatctctttctctttttgatttttttttgtttctttctctttctgtgtctctttctctattttattttctctctttctccctctttttttctttctctctttctttctttctctctttgattTTCTATCCCTCtcctctcttgttctctctctctctctttgattttcggtctctcctctctttttttctttctttctttctctctttgattTTCTATCCCTCTCCTCTCTtgttctcgctctctctctgtctctctctctttgattttcgctctctctctctctctctctctctgatgttgGGTGGAGGGGGGCGGGTGGTGGTACTCAGTTCTGCTGCTGTAGTGGATCAGAGCTGGATGATTCACAGTGTGGCTGTAGTGACGCTgcggcgccccctgctgttcaggACTCTTCTTCTGCAGGTTCTGGAGAAATCTGCTAGTGTGTCCTCTAGtagctagtgtgtgtgttttctgacgCATGCTgccccccctacacacacacacacacatcacacacacatatacacacactagggctgcacgatattggacaTATTGGAAAActgacattttacatttcagtatGTTTAATATGTTGTTTTGTGAtaatttagagaaattacagatgagaAAACTGGAGTTAAAatctgctacaggaagacgtctggctgacccacatggaaacagcagctttagcctttagctctttagattaacatgattaagaactgagtctcagtttcagaactgcattgataaaaaaaaaaagataaataataatagagcAGCTTTTCTGGGTCATACAAGAGAAATGAAGAACAGTGTGAACGTTTCTATTGCTTTACGCTTTTATAATTGTGATTATTatcgatatattgtgcagccctaacacacacacacacacacacacacgctatttaaaacacaattattGATACTTCCAGAGTCTTGCTGCCTTacgaaacacaaacacagacacacatctGACCATTTCCTTTTCTAAACACACTTATAAACATtcccctgtatgtgtgtgtgtgtgtcctgttctATTGTTCTATTCTTATTTCAGTCCtgttttgttttaagttttttatttttaattgtttagccaaatagttgtttttgtttactagtAGCAGagaagacaaacaaacaaaaacagactGTTTACAAACTGACTCCAAATGTGAAGATGTGTCTGATCTGATCACAGTCTGATCAGTCTCACCGTTTATGCTGTGTCTCCACCgcacactgactcactcacacacactcacacactctcacacacacacacacacacacacacaggtccgTGAGTGTGTAAATTTTACACTTTTGTAGCTACGAATGAAGGGACACAACGCACacatcgtcactgtccaatgaaaaacgtgTATCTCAAAAACttaagcaactttacaggacagAGATATCTATAACtctcttaacttttaatgaaagttGATTTccagttcgaatcccagtcatgcagcgtgccatcagctgccagagccctgagagaacacaattgtagagccttgctctttctgggtgggtacagtacagtagatggcgctcttctttCCCCCTTTATCACTCCGAGGGTGATTTGGATCAGcaaaaggctgcgtctgtgagctgatgtatcagaaccaccgagtcgctgcgctttcctccgagcgttagcgctgtgatgctactctgcaatgctactgcatcagcagcagctcaaaaagaggcggagtctgacttcacatgtgtcggaggaggcgtgttaGTCTTTacgtgttggagcatcactagtgatagagggaatCCTAATGAGGTAATTGGATGAGTGTAAAttggaaaataaaattataaaagtaattttggagaattctATCGATCCATCtttcaagaaattttgacacagtgtaagggatagtttaaatgtgtttaaattatgtaataaattatgtagaaaactaaaaatcatcaaaaatggagattcttgtttttcattggacagcaacgataagCACACCTAATGGCTGGTTTATAAAAACTAGCATTTAAAGGAAAGTAAGTAAATTTGTATTTGGTAGATGTTTGGTAGATTTGGTATTTTTTGTTACTTCTTGGTAATAAATCTTATACAGTTGGAAATcctattaatttatttcttttttaaatgcaagGAACATGAATTTGTGGGATGAGCCAATAAAAAATTAGCTTCAAATCTTCTCTGCTAATAATAAACAGCTTAGATCATCAAACACTGAACGAGTCGATGGCAGAATAAGAATAatggtgctgccactatgattgggaaatcgctggttcgaatcccggtcatgcagcttgctatcagctgccagagccctgagagagcacagttggccttgctctctctgggtgggtacagacagtagatggtgctcttttttcaactcatcactcctagggtgatgtggatcagcaaaaggctgcatctgtgagctgatgtatcagaaccgcaTTGCTGAGCTTTTCTCCGAgtattagcgctgtgatgctacaccATTTAAAAGAGGAATTAACAGGCTTATCAACGGTTTAAGTTTTATTCAAACACAAATTTCCTTACTTTCTGTGCTACGTTTACTTCTGCATCAAGACAATATGTTGTCTACGGTGTGGCCTGTGCGAGCGCCCTATGCAACTGTGcacatttatatttgtgcaGTCATGTAAAGGTGGGAACACAAGGCTcagcggaccaatcacagctgctgggAGGTGATTGTCAGGCTACAGCGTAGGGTACGTGTAGGtttgatgcagaagtataaattggtctTAAGGTGTAGGTTCTAGGTATTATCTGGGTGGAGCATCTATGATGTAGATACTGAAGGGTGTAGGTTCTATTCTCTTAGATGTTGAGTCAAACACTTGTgctcttttttaaagaatgtaggATCTAGATTGTGGGCTCTACATTCAATAGAGTAGGATTTAAAGTATAGGTTCTATACTCTAGGATATAAGGTCTAGGAAGTAGACTCTGTGTAATGAAGTAGGGTTAAGTACGGTCTAAATTGTAGGCTTTTTCTAGAATATTGAGTCTAGATTGTAATTCTAAGGTATAAGCGGTAGGGTCTGGGCAGTAGGATCTAGGAACTACAGTGGGTTAGTGGTCTTGACATAACCTTAGGGTTGTAGGGTCGGATAGGGGTTTGGGTAGTTCATATGTACTGTAATTCTGTTTATAGAGCTTTGATCTCCTGCAGAGATATATCTGTCTAAGGTTATGATTTAGGATAAAGCTTATGGGTGTAGGCAGTAGGTTATAGGTTCTAAGGTATAGTTTCTGGAGTTATATATTTGGAAAAGTGGGGGTGCAATTAAGTCAGACTCTGGAGTTTGTGATGTTAAATCCAATGTCCAAACTATGAAGTATAAACTGTAGATTGTTGGATCTAGACTCAACCATTTAGCATATAGGTGTTCCAGAGTATTAGTCATAGATTATAGGGTCTAGACTCTAGGGTATAGGGTGTATATCTATTGTCTAGGCTCCAGATGACTGGTAGATTATTGGGTCTGGACTCCAGAGAACTGGTTGTAGATTATAGAGTCTAGACCCCAAAGTATACTAGAGTCTAGATCCCAGAGTCTTGGTTGTAGATTGTAGGTTCTAGACTCTAGGGTGAGAATTGTAAAGTTTAGACTTTAAAGTACTGGTTCTAGAATATAGGGTATACACTCTAGGCTATATTGTTTTGACTCTAAAGTCTAGACTTTAGAGTATTGGTCATAGATTATAGGGTCTAGACTCTTGGATACAGGATGTGGATTCTAGAGACTAGACCCCAGAGAACTGGTTGTAGATTATAGGGCATAGACTTTATGCTTTAGAATATGGTTTCTAGAGTCTAGACTTCAGAGAACTGGTTGTAGATTGTGGGCTCCAGACTTTATAATACAGGTAATGGATTCTAAAGTGTAGGATGGAGATTCTGTGATTAAGAACTGGTTGTAGATTATAGGGTCTAGACTCTAGGCTCTAGAATATGGATTCTAGAGTGTAGACACCATAGTACTGGTTGTAGATTATAGGGTCTAGACTCTAGGCTCTAGAATATGTATTCTAGAGTGTAGACTCCAGAGTACTGCTTGTAGATTATAGGGTCTAGACTCTAGGCTTTAGAATATAGATTCTAGAGTGTAGACTCCAGAGTACTGCTTGTAGATTATAGGGTCTAGACTCTAGGCTTTAGAATATGTGTTCTAGAGTCTAGACTCCAGAGTACTGGTTGTAGATTTTAGGGTCTAGACTCTAAAGTATATAGTGTGGATTCGAAGAATCTAGACTCTAGATTACTGGTAGATTATAGGGTCTAGACTCTAGGCTTTAGAATATGTGTTCTAGAGTCTAGACACCAGAGTACTGGTTGTAGATTTTAGGGTCTAGACTCAAGGCTATAGAGCTCAGCTTCAGgtcagtgtgtggagtgtgtgtggggtgtgtgtttgtgtgtgagcggGTGGTGTAAGGTTCTCCGGGTGGAGCCGCAGTGATTTTCTACgtatggtttaaaaataaagagtatttttttaggctggaggaggaagaaggtTATTCTGGAACCCGTGCAGAACGGTTCTGCTGCAGAGCGTGAAGATGGAGcgcagtttttatttctataaagTTTGATATTTTATATGAAGCATCATAGCTGCAGTAGATTAAACTGTCAATTAcactgatgtgccaaaagtcataggacagcaAGTAGcatcgtgtcccatgacttttgccatgctctatggaagctaaagagcactatactgacctgtgggatatgtgtgtggggtctcctaCATTGAATTAATTGAATTTACACCCACTGCGCTCACTGTACACTGTGGGAATGGTAATATGACAGCGTGACATTGTGGATCAAGGCGCccactatcccatgacttttggcatgtctgtctattttattctgttttcacCAGAAAGTAGAAATTCAGTTCTTAGGAATAATTatacagcaataataataaaaatacagtaaatatattataatcattacacatttacagtatcatattaaacagtttacatttattttacacttctcttattttacgtttttaaatctgtgtaattgtttatgtgaatatgaaaaaaaaactgatttatgtttgttattttaaacctttattaagatctgtatgtttttttttattataatttctgtTTATTGAGTTTATACGAAGGCGATGTCGCCGCCCTTGTGGCTGATGGATGCAGATGATTACATGCCTGTTGAATGGAAATGTTCACTGAGATCTAATAAAGCATGAATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258695 True 5423 lncRNA 0.39 3 17125493 17131135

Neighbor

gene id symbol gene type direction distance location
strip1 strip1,LOC106565664 coding downstream 1872 17110671 ~ 17123621 (-)
LOC103037092 ece1,LOC107727859,LOC107691323,LOC108255065,LOC107749422,LOC106582992 coding downstream 117794 16966216 ~ 17007699 (-)
LOC103036783 NA coding downstream 170799 16886711 ~ 16954694 (-)
cstf1 cstf1 coding downstream 240897 16875408 ~ 16884596 (-)
fam120a fam120a,LOC107685640,LOC107691381 coding downstream 298056 16796868 ~ 16827437 (-)
LOC103038379 LOC107662820,LOC103362894 coding upstream 206 17131341 ~ 17158655 (-)
LOC111195389 NA coding upstream 31681 17162816 ~ 17178813 (-)
wdr77 wdr77 coding upstream 94543 17225678 ~ 17234938 (-)
LOC111195392 LOC108414075 coding upstream 136105 17267240 ~ 17285794 (-)
LOC103026358 LOC105900309,LOC100136526 coding upstream 178276 17309411 ~ 17336942 (-)
G190758 NA non-coding downstream 19825 17020911 ~ 17105668 (-)
G190769 alpl non-coding downstream 69371 17053147 ~ 17056122 (-)
G190754 NA non-coding downstream 81485 16993348 ~ 17044008 (-)
G190756 NA non-coding downstream 105057 16999579 ~ 17020436 (-)
LOC111195388 NA non-coding downstream 159424 16963895 ~ 16966069 (-)
G190786 NA non-coding upstream 18333 17149468 ~ 17151839 (-)
G190785 NA non-coding upstream 22255 17153390 ~ 17154405 (-)
LOC111195391 NA non-coding upstream 105446 17236581 ~ 17238451 (-)
G190827 NA non-coding upstream 119062 17250197 ~ 17251702 (-)
G190816 NA non-coding upstream 167809 17298944 ~ 17299699 (-)
cass4 NA other downstream 256032 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 526176 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 664565 16345701 ~ 16460928 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 1658909 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 1803318 15318643 ~ 15322175 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 49979 17181114 ~ 17193747 (-)
G190788 NA other upstream 86186 17217321 ~ 17219780 (-)
mrpl20 mrpl20 other upstream 1008228 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 1036105 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 1180317 18311452 ~ 18315337 (-)

Expression


Co-expression Network