G190786


Basic Information

Item Value
gene id G190786
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17149468 ~ 17151839 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258698
tgctctatatgcacattctgacagactgtaatacactacataaAGCATAGGGGgcgctctatattgctctataatgctctataatgtttatatgatccacacactcattctgacagactgtaatacactaaaggatgcatagggggcgctctataatgctctataatgttcatatgatctacACGCTCATTCAgaaagactgtaatacactacaggaagcgtagggggcgctctataatgctctataatgtttatatgatctacacacactcattctgactgACTGTAACACATTAAAGGATGCataggggcgctctataatgttcatatgatccacacattcattctgacagactgtaatacactacaaaaAGCGTAGGGGCGctatataatgctctataatgctctataatctTTAAATGATCCACACgcttattctgacagactgtaatacactacaggaagcgtagggggtgctctataatgctctataatgcgaATGTCGAATTGTAGAGCTATAGGATTGTATAGCTGTAGGACTGTAGAGCTGTAGGACTGTAGGATTGTAGAGCTGTAGGACTGTAGAGTTATAGGATTGTAGAGCTGTAGGACTGTAGAGCTGTAGGACTGTAGAGCTGTAGGATTGTAGAGCTGTAGGATTGTAGAGCTGTAGGATTGTAGAGCTGTAGGATTGTAGAGCTCTAGATCTGTAGGATTGTAGGGCTGTAGGATTGTAGAGCTGTAGGATTGTAGAGCTCTAGATCTGTAGGATTGTAGGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258698 True 781 lncRNA 0.41 3 17149468 17151839

Neighbor

gene id symbol gene type direction distance location
strip1 strip1,LOC106565664 coding downstream 25847 17110671 ~ 17123621 (-)
LOC103037092 ece1,LOC107727859,LOC107691323,LOC108255065,LOC107749422,LOC106582992 coding downstream 141769 16966216 ~ 17007699 (-)
LOC103036783 NA coding downstream 194774 16886711 ~ 16954694 (-)
cstf1 cstf1 coding downstream 264872 16875408 ~ 16884596 (-)
fam120a fam120a,LOC107685640,LOC107691381 coding downstream 322031 16796868 ~ 16827437 (-)
LOC111195389 NA coding upstream 10977 17162816 ~ 17178813 (-)
wdr77 wdr77 coding upstream 73839 17225678 ~ 17234938 (-)
LOC111195392 LOC108414075 coding upstream 115401 17267240 ~ 17285794 (-)
LOC103026358 LOC105900309,LOC100136526 coding upstream 157572 17309411 ~ 17336942 (-)
LOC103036700 LOC108415149 coding upstream 191161 17343000 ~ 17356073 (-)
G190783 NA non-coding downstream 18333 17125493 ~ 17131135 (-)
G190758 NA non-coding downstream 43800 17020911 ~ 17105668 (-)
G190769 alpl non-coding downstream 93346 17053147 ~ 17056122 (-)
G190754 NA non-coding downstream 105460 16993348 ~ 17044008 (-)
G190756 NA non-coding downstream 129032 16999579 ~ 17020436 (-)
G190785 NA non-coding upstream 1551 17153390 ~ 17154405 (-)
LOC111195391 NA non-coding upstream 84742 17236581 ~ 17238451 (-)
G190827 NA non-coding upstream 98358 17250197 ~ 17251702 (-)
G190816 NA non-coding upstream 147105 17298944 ~ 17299699 (-)
G190818 NA non-coding upstream 262668 17414507 ~ 17415735 (-)
cass4 NA other downstream 280007 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 550151 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 688540 16345701 ~ 16460928 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 1682884 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 1827293 15318643 ~ 15322175 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 29275 17181114 ~ 17193747 (-)
G190788 NA other upstream 65482 17217321 ~ 17219780 (-)
mrpl20 mrpl20 other upstream 987524 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 1015401 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 1159613 18311452 ~ 18315337 (-)

Expression


Co-expression Network