G190788


Basic Information

Item Value
gene id G190788
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17217321 ~ 17219780 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258703
GAGCTTTGATACTCATATCCTGAGCTTTCTTCGCCACTTTGTTCTCCAGTTCCTTCATGTCCAGTCCTCGGGTCTGCATGGGCAGGGTGGCACTCTTGGGTTTAGCTGTAGATTTTAGAGGAAAACCAGCCGCCCCATCATCATCAGACAGAGGGGAGTTCCACTCGTCACTGTTGGGGTCCGCCTCCTTTACTGGAGCAAACTTGGAGTCCATTTCTAGCATCTTCTTTTGCAGGATGCTTAGCAGGGTGGCCTGGCTGGCCGAGACCGATGCGGGTGTCTGAGCTGGGGGTTGggttttgggttgagttggtGGTGGAGCTTGGGTTTGGGTTTTGGGTTGGACTGGGGGTGGAACTGGGATTTGAGCTTTGGGTTGAGTTGGTGGTGGAGCTTGGGTTTGGGTTTTGGGTTGGACTGGGGGTGGAGCTGGGATTTGGGCTTTGGGTTGAGTTGGTGGTGGAGCTTGGGTTTGGGTTTTGGGTTGGACTGGAGGTGGAAATGGGATTTGGGCTTTGGGTTTGGTtggtggaggagctggaggTTGGGTTGTTGGTGGAGCTGCAGGTTGGATAGTTGGTGCAGGTGGAAGTTGAGTTTTGAGTTGGGCTGGGGTTTGTGCTGGAAATTGGAATTTAGGTTGGACTGTTGGTTGAACTGgaagttgatttttggtttgggCCATTGGTACAGCTTGTGTTTGGGTCTGTGGTTGGACTGGTGGCTGTCCTGGAGGGGCTTTTGGTTTGCTTAGCACCACTTGTTTGAGTATGGGTTCAGTCCTGGTAACAGATGTAGGTGGTGGTGCTGTATAAGTGCTGGATAATTTGTCGTTTGGAGTAACAGAAGGGCCATTGATGAGCGGTTGAGCAACACTCTTTGCCGGTGGAGCAGGTGGCGGTGTGCTTGGTGGAACGTCATCTTCCGAATCAGAGTTAGCGAACTCAGGTGGAGGTGGGATGAAAGGAATGGCAGACTCATTGTCCTCTTGCTTCACAGGACTGATGGAAAGTACAGGTTGGGGGACTTGGGAAGGTTCTTGTTTGGGAATATTTGGGCTTTGGGGTTTGGGCTCTGCTGAGATGGCTTGTTTGGGCTCTGTGCGGAGAAGACTTTCTGAGGAAGCAGGAATTGGGGTGATGGTGAAGGAGTTGGGTTTGGTCTCATTAGGTTGGACGCTAACGTTCAGGGATTCAGCAGAGCTGTTGCTCTTGTTGCTGCTCTGTCTAGACAAGCCAGACCGGTGCTTGTCTCGGTTCTTGGCGGCCATTAGAAGGGCAAGTGGGGATGTAGAAGCTTCTTTCCCACTGGATCCCTCATGACCTCGCAAGGTTTGCAGCTTGTGGCTCAGTAACGGACTGTAGGAGCGTGTTCTGCTTGGAGATGCTGGCCGTTCATTGACTTGACTGATTTCTTGAACCGGTGGGATATTTTGAGACCGTTCTGTGTTGGGGGAACTTCTTACAGAGCTTTGGATCTTATTCGGGACTTCTTGCGGAATCGTCACTTTTGCAGGCTCGCCACTGATGGTTGATCCGGGCAATTCTGGCAAGTTCTTGTTCAAGTCTTCTACGTCTTTCTCTAGCTGGATGCCTGAGCTGTTTCGTCGCACTGGCTTGACTGGGGGTACCACATCTTGACCTGGACTGACCTCCTTTACTGAGGAAGAGGCCTTCCCATTGATGTGAACCCCAACTGGGTTCCCAGAAGTGTCCTCTAGCAGCAGGATCTGCTGGGTTCTTACCTCCTTGTCAGTTTGGTTGCTGAGCACTGTTGTTTTTGGCATGCTGTAGAGCTTGGCTGTGGTCTGAGGGTTGAAGCTGGAAGCTGGGGTTGCTGCGGGTGTAGGAGTTGGGGTAACTCAAAATTATAGATGGAGGACAGCCTCACAGGTTTTGGAGGCGGTGTCTTCTGGGCATTTCTGAGAAGTGGAGACTCTGGCTTCTCCATTGGAGGTAGTGGAGGAGTGAAGGTGGGGCATTCTGGGATGTCTTGGGCAGAAATTAAAGGGCTGGAGATGGGGACAGAGGACCTCAGGCTGGAGATATCGCTGGGAGGTTTTGGAGGAGCCATCGGTGGGGGCTTGATGAAGACTGGGTCCAGCTCCTCTGATGTTGTGGAGCCAGTTAGTGATGGTGGTTTGGGAGGAGGCATGGATGGTGGTTGCAGCGCTGCAAGATCTATAGATGGGTCCTTGTTCCCAAAGAATTCCTGTGGAGGAGGGATATATTGGGGTGATGGAGGGATGAActggggtggtggtggtggaggagccATAGAAGGTGGAGCAGGAATCAAGATCTGTCCTTCCTCAGGGTCTGCAATACTGATCATGCCTCCGTTTGGAAGTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258703 True 2353 TUCP 0.52 2 17217321 17219780

Neighbor

gene id symbol gene type direction distance location
LOC111195389 NA coding downstream 38508 17162816 ~ 17178813 (-)
LOC103038379 LOC107662820,LOC103362894 coding downstream 58666 17131341 ~ 17158655 (-)
strip1 strip1,LOC106565664 coding downstream 93700 17110671 ~ 17123621 (-)
LOC103037092 ece1,LOC107727859,LOC107691323,LOC108255065,LOC107749422,LOC106582992 coding downstream 209622 16966216 ~ 17007699 (-)
LOC103036783 NA coding downstream 262627 16886711 ~ 16954694 (-)
wdr77 wdr77 coding upstream 5898 17225678 ~ 17234938 (-)
LOC111195392 LOC108414075 coding upstream 47460 17267240 ~ 17285794 (-)
LOC103026358 LOC105900309,LOC100136526 coding upstream 89631 17309411 ~ 17336942 (-)
LOC103036700 LOC108415149 coding upstream 123220 17343000 ~ 17356073 (-)
LOC103035786 stk38,LOC105900354,LOC105016867,LOC107667630,LOC106583482 coding upstream 199272 17419052 ~ 17432774 (-)
G190785 NA non-coding downstream 62916 17153390 ~ 17154405 (-)
G190786 NA non-coding downstream 65482 17149468 ~ 17151839 (-)
G190783 NA non-coding downstream 86186 17125493 ~ 17131135 (-)
G190758 NA non-coding downstream 111653 17020911 ~ 17105668 (-)
LOC111195391 NA non-coding upstream 16801 17236581 ~ 17238451 (-)
G190827 NA non-coding upstream 30417 17250197 ~ 17251702 (-)
G190816 NA non-coding upstream 79164 17298944 ~ 17299699 (-)
G190818 NA non-coding upstream 194727 17414507 ~ 17415735 (-)
G190813 NA non-coding upstream 196179 17415959 ~ 17416966 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 23574 17181114 ~ 17193747 (-)
cass4 NA other downstream 347860 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 618004 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 756393 16345701 ~ 16460928 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 1750737 15409207 ~ 15466584 (-)
mrpl20 mrpl20 other upstream 919583 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 947460 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 1091672 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 1488539 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 1677729 18897509 ~ 18902285 (-)

Expression


Co-expression Network