irf6 (irf6,LOC107599105,LOC106565674)


Basic Information

Item Value
gene id irf6
gene name irf6,LOC107599105,LOC106565674
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17181114 ~ 17193747 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258706
GAGCCACTGAGCAAAGGTGTGCCGCCCTGAAACGTGACTGACGTCACCGCCTACCTGAGTTTCGGGAAGCGTCGAGAGGAGGAAAAACAGAGCTCGTGCAAaacattctctctcacacacacacacacacacacacacttttctctcactctctgagggagtgtgtgtgtgtttggtcggtgtgtgtgtttgtttggtcGGTGTGTGGAAGTTTAAAGAAACAGCCAAAACTCAAGCAGGAGCTTTGCTTGGCAACTTCCGGCCCGCGCGCGCTGCAGACAGAGATGTCGGTGCACCCCCGGCGTGTGCGGCTGAAGCCCTGGCTGGTGGCTCAGGTGGATAACGGGGTGTTTCCGGGGTTGGTGTGGTTGGACCGTGAGGCCAAACGCTTTCAGATTCCATGGAAACATGCCACCCGGCACACCGcccagcaggaggaggagaacacCATCTTTAAGgcgTGGGCTGTGGAGACGGGAAAGTTTCAGGAGGGCGTGGACGAGCCGGACCCGGCGAAGTGGAAGGCTCAGCTCCGCTGTGCTCTAAACAAGAGCCGGGAGTTTAACCTGATCTACGACGGAACCAAAGAAGTTCCCATCAACCCCCTGAAGATCTACGACGTGTGTGACATCCCCCAGCCTCTCAGCAACCCTGgttctacaggttctgttcCTACGTATGATTCTGACGGTGAGGATGATGATGTTGCAGATACACCAGAACCCCCACCACCTCCGTACCACCCT
>XM_022682839.1
acacacacacttttctctcactctctgagggagtgtgtgtgtgtttggtcggtgtgtgtgtttgtttggtcGGTGTGTGGAAGTTTAAAGAAACAGCCAAAACTCAAGCAGGAGCTTTGCTTGGCAACTTCCGGCCCGCGCGCGCTGCAGACAGAGATGTCGGTGCACCCCCGGCGTGTGCGGCTGAAGCCCTGGCTGGTGGCTCAGGTGGATAACGGGGTGTTTCCGGGGTTGGTGTGGTTGGACCGTGAGGCCAAACGCTTTCAGATTCCATGGAAACATGCCACCCGGCACACCGcccagcaggaggaggagaacacCATCTTTAAGgcgTGGGCTGTGGAGACGGGAAAGTTTCAGGAGGGCGTGGACGAGCCGGACCCGGCGAAGTGGAAGGCTCAGCTCCGCTGTGCTCTAAACAAGAGCCGGGAGTTTAACCTGATCTACGACGGAACCAAAGAAGTTCCCATCAACCCCCTGAAGATCTACGACGTGTGTGACATCCCCCAGCCTCTCAGCAACCCTGgttctacaggttctgttcCTACGTATGATTCTGACGGTGAGGATGATGATGTTGCAGATACACCAGAACCCCCACCACCTCCGTACCACCCTCCAGGTTTGTCACAAACTACAGTTCTGTTATtattttgtgtgttttcagtgaCTGATCTGGAGGTGCAGTTTTATTACCGTGGTAAGGAGGTGTGTCCAGCAGTGACGGTTAGTAACCCTCAGGGCTGCCGGCTGTTCTATGGTGATCTGGGTCCGATGGTGAATCAGGAGGAGCTGTTCGGTCCGATCTCTCTGGAGCAGCTCCGCTTCCCCCCCATCGAGCACATCAACAACGACAAGCAGCGGCTCTTCACCAACCGCCTGCTGGACGTGATGGACCGCGGACTCATCCTGGAGGTCAGCGGACACGACATCTACGCGGTGCGGCTGTGCCAGTGTAAAGTGTACTGGTCCGGACCCTGTGCTCCAAACCCCAACGCTCCCAACCTCATCGAACGCCAACGCAAGGTCAAACTCTTCTGCCTGGAGTCCTTCCTCAGCAgtgtaATTGCTCATCAGCGTGGTCAGTCTCCTACTTTGCCTCAGTTTGATATCCACATGTGTTTTGGAGAGGAGTGGCCAGACGGCCGGCCGAGGGAGAGGAAGCTGATCATGGTTCAGGTGGTGCCGGTGGTGGCTCGCATTATCTGCGAGATGTTCTCTGGAGACGGGACTCGCTCGTTCGACAGCGGCAGCGTCCGGCTGCAGATCTCCGTCCCCGACATCAAGGACAACATCGTCACTCAGCTGAAGCAGCTCTACCGCCTCCTACAGACGCACCAGGGCCACGACACCTGGCCCCTCCCCCCGGGGGCCAACGTCCACCTGCCTGCCACGCTGCACGCGCAGtaacacactctaacacactgGTGGCGCTCTGTTACTGCAGCTGCCGGGAGGTGTAGGCGTGAAAGTACTTACGTTGGTGGAACGTCTGCACCCTgtacatgcatatatatataaatttagatATTTCgtgcacatttaaaatacttaatataAAAGATCATAGCAAACACTTACAGATACCTGGTGAACCTGGTGAACCTGGTGGTTTCCATGGACGgttattaaaaacctcttatttaatataaaaacctAATTCTTTGAAGTAAGATATAATTATGTATGGATGGGTGTAGAGGTTCTGCAGACATTAAGATTAATCCATCCAGGTTTAGAACTTGATattatttctgttattattcttattattaatagAATGAATGATATCTTTAAACAGGATGAATCTTTAAATAGAATATATAgggtatatacacacacacacatacacacatatatacacacgcCAGCAGGCCGGTGGGTCAAAGTCTGTCCTGCACtcatttttattctgttaatcATTGATGATGAACAGTTTGGGTTCTCTAGTTTAGAGTCTCTTAAAGCCACAGAAGAAGCGAACTAAGGGTTattccgtaaaaaaaaaaaaatatatatatatatatatattaatatattcataacCTCATAACCTTTCTCTGTTCTTAACGATCCTCATTAAATAACATCATATCATCATCATTCAGGCTGCACAATAATTGCacgtaataaataaatgtattgttattttatagcttatattacaatacatactgtatgatttaaataatatataattttacaatatatcTGACTGTATTTAACAGTCtaattaatatgaattaataaGTCTAGGCTGACCCCTGGTGGATAATGGCTAAATCTAACCCCCTGTATGATGTTATGGTGCAGTTCTGGTGGTGTTGCTTCTGTCTATTATAGTATTTGATGTATCGTTACTGTAgctttaataacagctctattTTTCTTTATGCTCTACTATTTTAAAATCCTGTTCTAAATAAGAGTACACTGATGAATTCTCCTGTAGCTGTACGTCTCTGTGAACGTGTCTGGAGTTGTGTAGATGTTTAGATTGTGTGGATTGTGTTCTGGATGTTTCTGTATTTTGGGATTTGCCTCACTTGCTGGAACTGTAAACTATAATTCTGTATTTCTGCGATTCTGTGAGTTCATCTAATGATTTCATAGCTTCTATTTGAGTCTCTCtgcttttataaaataaaaaataagcaaagcTTC

Function

symbol description
irf6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in epidermis development. Acts upstream of or within embryonic neurocranium morphogenesis and epithelium development. Predicted to be active in nucleus. Is expressed in several structures, including blastoderm; digestive system; forerunner cell group; head; and sensory system. Human ortholog(s) of this gene implicated in several diseases, including Van der Woude syndrome; cleft lip; orofacial cleft 6; popliteal pterygium syndrome; and syndactyly. Orthologous to human IRF6 (interferon regulatory factor 6).

NR:

description
PREDICTED: interferon regulatory factor 6

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060429 epithelium development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10154 IRF6; interferon regulatory factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU258706 False 746 TUCP 0.56 4 17188665 17193747
XM_022682839.1 True 2664 mRNA 0.46 7 17181114 17193619

Neighbor

gene id symbol gene type direction distance location
LOC111195389 NA coding downstream 2301 17162816 ~ 17178813 (-)
LOC103038379 LOC107662820,LOC103362894 coding downstream 22459 17131341 ~ 17158655 (-)
strip1 strip1,LOC106565664 coding downstream 57493 17110671 ~ 17123621 (-)
LOC103037092 ece1,LOC107727859,LOC107691323,LOC108255065,LOC107749422,LOC106582992 coding downstream 173415 16966216 ~ 17007699 (-)
LOC103036783 NA coding downstream 226420 16886711 ~ 16954694 (-)
wdr77 wdr77 coding upstream 31931 17225678 ~ 17234938 (-)
LOC111195392 LOC108414075 coding upstream 73493 17267240 ~ 17285794 (-)
LOC103026358 LOC105900309,LOC100136526 coding upstream 115664 17309411 ~ 17336942 (-)
LOC103036700 LOC108415149 coding upstream 149253 17343000 ~ 17356073 (-)
LOC103035786 stk38,LOC105900354,LOC105016867,LOC107667630,LOC106583482 coding upstream 225305 17419052 ~ 17432774 (-)
G190785 NA non-coding downstream 26709 17153390 ~ 17154405 (-)
G190786 NA non-coding downstream 29275 17149468 ~ 17151839 (-)
G190783 NA non-coding downstream 49979 17125493 ~ 17131135 (-)
G190758 NA non-coding downstream 75446 17020911 ~ 17105668 (-)
G190769 alpl non-coding downstream 124992 17053147 ~ 17056122 (-)
LOC111195391 NA non-coding upstream 42834 17236581 ~ 17238451 (-)
G190827 NA non-coding upstream 56450 17250197 ~ 17251702 (-)
G190816 NA non-coding upstream 105197 17298944 ~ 17299699 (-)
G190818 NA non-coding upstream 220760 17414507 ~ 17415735 (-)
G190813 NA non-coding upstream 222212 17415959 ~ 17416966 (-)
cass4 NA other downstream 311653 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 581797 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 720186 16345701 ~ 16460928 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 1714530 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 1858939 15318643 ~ 15322175 (-)
G190788 NA other upstream 23574 17217321 ~ 17219780 (-)
mrpl20 mrpl20 other upstream 945616 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 973493 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 1117705 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 1514572 18708319 ~ 18798915 (-)

Expression


Co-expression Network