G190810


Basic Information

Item Value
gene id G190810
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17425650 ~ 17513317 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258731
TCACTGTATTAAATTTCACATGTTTAATGTTTCATAAACGAAAACCTAAAGCTGTTTACAGTAAAAGTTCCATATGGCTTTATTTCATGTAAAGATTTTACAGTTTGGAATGTACAGCAAAACTCTCCAGCAACATCCCAGcaataagaaaaacacacacacacacacacactcgctccctctcaaacacacactcgcacatgGTGGCAAACCTGGCACTTTGCATTGTACTgcagaaaatacataaaaatatccACAAACTAAATCTActaaaaaggctaaaagtgAAATGTGTTTGGGCCGACTAAACAAACGGAcctgttataaaataaatattttaaaaagtagtagAAATTTAGATTCAGGGACAAATCTTGAGTTAACATGCACCAATAACTAATGTATTGAATttgttaaatagtttttaaaaaagcatattCTGGAACTGTTTCCAAAGTATTCAGCTTCTCTTTTagcgtttttttgtttttcacaaaaGCATAAATTTTTCACAAAAGCattaattgcaaaagtaaaaacatGAATTTCCTGACCACAAATACcctacaaccccccccccctccaaaaaaaaaaatcacaaaatactGCAAAATAAACCATTAGAACAAgtaaaactgtagaaaaatgtaaaaagagaaaacaggagAAATACCCAGCATTTTGGAATCAAATCAAAAAGTTCtgatcagtttttaaatgatctttTCTGTGATTGATTTAAAACatagagtttttatttttaagttttatccCTTAGAAACTCCAGACAGTTTAAAACAGCAGCAAAACACTGCTAACAAAGAAACcggcaaaaaaaagaagaaaacggCTAATTAGAATCATgctaaaaacattgtaaatgcTAACTTCTGTTCAATGTTAGCAATATTAACTAGCATGTTTTGTGAAGCGCCCAGCTAACAAGAGAACATAATAAGAACGTTTAGAAACATTTCAAAAAGGtttcaggaaggttagcctggtaagctacaaaaaagaatgtttgAGGAACGTTCTGGAAATGCATAAcattaccagaacatttaaaaatgtttaattaaaccGTTGTAAGAACATCCAAAAAACTTTACAGATTGAAGGATTTTAAGAATGTAAATTGTAACGTTCAGAAAACGTTCTTTTGACCTTCTTTTCAAGGTTTGTCTTAGCATTACTCACTGACTGTTAAAAAAATTTGCATGTTTGGTCAGTGTTAGCATCTCAGCTAACTAAATAGGTAGGTTTTAAGCCGCACGTTCCATCAGCTAATGGGTGGCACCTATAGTCaggctctgcctctttttgaactgctgctgatgctgtagcatcattgctgaAGCATCacagct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258731 True 1370 lncRNA 0.33 2 17425650 17513317

Neighbor

gene id symbol gene type direction distance location
LOC103036700 LOC108415149 coding downstream 69577 17343000 ~ 17356073 (-)
LOC103026358 LOC105900309,LOC100136526 coding downstream 88708 17309411 ~ 17336942 (-)
LOC111195392 LOC108414075 coding downstream 139856 17267240 ~ 17285794 (-)
wdr77 wdr77 coding downstream 190712 17225678 ~ 17234938 (-)
LOC111195389 NA coding downstream 246837 17162816 ~ 17178813 (-)
LOC103034515 LOC108413010 coding upstream 3571 17516888 ~ 17535789 (-)
LOC103024167 NA coding upstream 40931 17554248 ~ 17574657 (-)
znf76 znf76 coding upstream 95474 17608791 ~ 17619936 (-)
c22h6orf89 cunh6orf89 coding upstream 108150 17621467 ~ 17627399 (-)
LOC103021559 LOC108415296 coding upstream 151800 17665117 ~ 17672273 (-)
G190813 NA non-coding downstream 8684 17415959 ~ 17416966 (-)
G190818 NA non-coding downstream 9915 17414507 ~ 17415735 (-)
G190816 NA non-coding downstream 125951 17298944 ~ 17299699 (-)
G190827 NA non-coding downstream 173948 17250197 ~ 17251702 (-)
LOC111195391 NA non-coding downstream 187199 17236581 ~ 17238451 (-)
G190804 NA non-coding upstream 1157 17514474 ~ 17595696 (-)
G190795 LOC103023632,LOC108415135,LOC107671524,LOC107576648,LOC107698306,LOC107750684,LOC107575492 non-coding upstream 15362 17528679 ~ 17642978 (-)
G190809 NA non-coding upstream 27069 17540386 ~ 17554117 (-)
G190811 NA non-coding upstream 138247 17651564 ~ 17653882 (-)
G190887 NA non-coding upstream 150697 17664014 ~ 17701842 (-)
G190788 NA other downstream 205870 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 231903 17181114 ~ 17193747 (-)
cass4 NA other downstream 556189 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 826333 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 964722 16345701 ~ 16460928 (-)
mrpl20 mrpl20 other upstream 626046 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 653923 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 798135 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 1195002 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 1384192 18897509 ~ 18902285 (-)

Expression


Co-expression Network