G190816


Basic Information

Item Value
gene id G190816
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17298944 ~ 17299699 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258737
gtgtgtgtgtgtgtgtgtgtgtgagggagttaGACGCCCGTGGGAAAAACACAGCTGTGTttgagtatgagagagagagatgtgtgtaTGGACTTTGGTATCTTATGTCACATTTCAagagtgtgtttaagtgtgttaagagtgtgtagagtgagtATATCTGAGAGTGTGTTaagagtgtgtttgagtgtgttaagagtgtgtagagtgagtATATCTGAGAGTGTGTTAAGGGTGTGTTTGAGTGTTGATGACTCCTGCAAACCCACAGCAGTTAATGAAAAGGTTCCTGTTGTGTGAAGAATGTTGAAGAACTTGATGGATAAAAAG

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko00250 Alanine, aspartate and glutamate metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU258737 True 330 lncRNA 0.41 2 17298944 17299699

Neighbor

gene id symbol gene type direction distance location
LOC111195392 LOC108414075 coding downstream 13150 17267240 ~ 17285794 (-)
wdr77 wdr77 coding downstream 64006 17225678 ~ 17234938 (-)
LOC111195389 NA coding downstream 120131 17162816 ~ 17178813 (-)
LOC103038379 LOC107662820,LOC103362894 coding downstream 140289 17131341 ~ 17158655 (-)
strip1 strip1,LOC106565664 coding downstream 175323 17110671 ~ 17123621 (-)
LOC103026358 LOC105900309,LOC100136526 coding upstream 9712 17309411 ~ 17336942 (-)
LOC103036700 LOC108415149 coding upstream 43301 17343000 ~ 17356073 (-)
LOC103035786 stk38,LOC105900354,LOC105016867,LOC107667630,LOC106583482 coding upstream 119353 17419052 ~ 17432774 (-)
LOC103035479 LOC108416666,LOC108416668 coding upstream 152318 17452017 ~ 17458184 (-)
LOC103035164 NA coding upstream 169276 17468975 ~ 17478169 (-)
G190827 NA non-coding downstream 47242 17250197 ~ 17251702 (-)
LOC111195391 NA non-coding downstream 60493 17236581 ~ 17238451 (-)
G190785 NA non-coding downstream 144539 17153390 ~ 17154405 (-)
G190786 NA non-coding downstream 147105 17149468 ~ 17151839 (-)
G190783 NA non-coding downstream 167809 17125493 ~ 17131135 (-)
G190818 NA non-coding upstream 114808 17414507 ~ 17415735 (-)
G190813 NA non-coding upstream 116260 17415959 ~ 17416966 (-)
G190810 NA non-coding upstream 125951 17425650 ~ 17513317 (-)
G190869 NA non-coding upstream 179859 17479558 ~ 17480715 (-)
G190812 NA non-coding upstream 194712 17494411 ~ 17552549 (-)
G190788 NA other downstream 79164 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 105197 17181114 ~ 17193747 (-)
cass4 NA other downstream 429483 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 699627 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 838016 16345701 ~ 16460928 (-)
mrpl20 mrpl20 other upstream 839664 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 867541 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 1011753 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 1408620 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 1597810 18897509 ~ 18902285 (-)

Expression


Co-expression Network