G190917


Basic Information

Item Value
gene id G190917
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17930156 ~ 17938150 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258863
tttttaaatgttctgcattgtagattaatactaaactcttTTGAATTTcgtgtctcttaataaagtgtttgagagcatcagttgtaaagtagtaaatagctctatttgagtaatgctcaACAATCCGCAAGTCAATTTCACtgtaaagaccatcaaaacattataatgatggaactggcactcatcaggactgcccagGAAAGGAATAGGAgtaaccagcctcagaaactgcaagtttacagctccccagataagagcaccttatGTGTCTGACCgatcactttactatttatttactatgtaggaaataaaatacaaactttagactggtactgtacatttagaggattaatattacagtataaatctacactgtctaatgaaaaacacttttgtccaaaacagcaactttacagaaaagagaaaaaaccttgaaaactttcaatggaagtcaatgtaaagagaattaatttcaggtaattttaaagagtttcttttggtccgttcatcaagaaattttggcaaaaacaaacaaaaaatcgacaaaaattgagatgtgttttttattggacagcgatgatattcACCACAACGAGAGACTGAGAGATTAGTATTAATAACACTCTCttaatgtaggtattgtgatattacacactaaaaaggcggagctacagtcttTTATAAGGCTTAAATGGGATTTGCAACAGAATTCTATAAATCATGTCCAACCAATCAACAGTCGCTTTGAAAGAGCACATTTGTGGGCGGAGTTAGAGCTGAAGCTTCTTCTGAATTGTTAAATGCATTAAAGAATGAAGAAAAAGCCACAGACTGCATGAGAAGAAACGGGAAAAGACTGGAAAATGAGACTGAAGGTTTTTAAATCATACTCCATATCATACACTGTTCATttctacacactcacacacactcttaaacacacacacacctgcggAGTTATGATGATGCCTTCTCCACCACTCAGCCTTCATTTTATACCATCAGATGAGGAAAAGAAGACGACGAAACACTGAAATCTTTGATACACtgacttttttattgttatcagGAGCTGATTTTATACGGACGTTTATGAAATTCCtgaatttaaacatttcatCTGAACGATTTGCCTTTTATCACTTTTACTCAATGAGCAGAagaaatgtttttgtattttatagctAAGAAATGAAGGATTCTGggctttttttgtaaaatatttcaaatacgTGTGAATTAAAGTGAGTTTCTGAGACTGTACAGACCTGTTTTAAGAGTGTAAATATTTTGCTAATActtgagaaacaaaaaaagaacgtACTAAATATTTCACTGCTACTGTTTTGTAAATGTTGTGAACGATGAGTTGAATTCATAAGCTAAATCTCAGcccaacttttttattttttattttttattattattcagtttttCATTGTTCTGGTCACCTCTCACAGGTTCATACAGGTACCTGACCTGCAGGGGGCGCTGATGCTCCAACACAATGCTattacaccaatcagccataagaATAAAACCACTGGCAGGGGAAGTGGATAACACTGTTAATCCGGTTTCAGTGTTCAGTTATTAAAGTTAATTTGATCTGAGGCACTTTGACAATAAACGAGGGGGCCTACACAATGTTAaagaggtggttttaatgttatggctgatcgtATGTGGAAGCTTATTTTCGCTTGGTGACTtgaaataaagctctggaaaaaattgagagattttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattccaaataaaaatattttagtcatttagagcatttatttacagaaaatgagaaatggctgaaataaaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagttcagaaatctatatttggtgaaataactctgttttttaatcacagtttttatgcatattggcatgttctcctccaccagtcttacacactgcttttggataaccttatgagtaaactttatttactcctggtgcaaaaatttggtcaaatcaaagaaattcatcatttcttattttattttccagagctgtatatcctgGCAGTACGTAAAGTTTAATTAATGTTCCAAAATATTGACTTTGTTTTGaacatttttgagttttatgTAGTTTGACAAAATAAATCCTTATTTTGTCACAAATGGGATTTGAGACATTGAGACAAAAAAATctatagtgttttttatttttatacctgGTGAAAATTTGCTTCCACAGCAATGTGAGTGGAgttaaaaagctaataaaactGTTGTAAGTTTAAACGTTTTGTTTTATTAGAGGGAAGCTGCTGTATTTGAGTAAATGTCACTGTTTTCCAAGCTAACTTTCTTTTAGCTACTGAAAACAATCCGTTTTATTCCAAAGGACTGAAGGAATTGCTCCGACATGCTAACAACAACAGGCTGGCTAATCTGTAaatgctagctagcattagcattttgaCTGAACTGTTCCTTTtaggttttgtttggtttgtttgatcACGCAATAAATAGATCCTGTCTGGTCGTTTAGCTGAACACCAAAAGATAAAACCTCTCGTACTTTTTCTAATCAAAAAGTATATTCATTCTGAAGCAATCAAGGTCAAACTGAGTTAATAAAAGAGagatttatatgttttaaaaaattctgGGAATAGAAAACATGAAGCATGAAGCTGCCGAGACCCTTTTTTTATCCAGCAGATTAGAAAAGGCAATACAGACCATAAAAAACTTTCTCATTCTCATATCCTCAAACCGTTTAACCTGAAACAACATAGTTatagtttaattaacatttattaaagcTAATAACATAAAACATCAATATAGGAAGTTATATTTAGCATCTAGCTAACCACAGTTGTTTAATACAACCATCTGCTGGACAAAAACATACTCTGGGCAGCTTTATAATGAGCAAATACTGAATTGTTCTCTTTGTGGACTCTCTGTTGTAAATAtctgtattttgtgtattttaaatcaGTCACTGGGGATCAGACCTGCTGTAGGAGCTAAAGCTGAACAGGGTCCAGACACTGCCTGTATTTTTCTATGTGGAT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG:

id description
ko04390 Hippo signaling pathway
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
TU258863 True 3198 lncRNA 0.33 2 17930156 17938150

Neighbor

gene id symbol gene type direction distance location
LOC103045494 LOC108415559 coding downstream 49206 17856281 ~ 17880950 (-)
med20 med20 coding downstream 92816 17830616 ~ 17837340 (-)
LOC103032918 usp49 coding downstream 100584 17815209 ~ 17829572 (-)
elf3 elf3,ehf,LOC105900760 coding downstream 203903 17717899 ~ 17726253 (-)
LOC103021559 LOC108415296 coding downstream 257883 17665117 ~ 17672273 (-)
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding upstream 84308 18022458 ~ 18041503 (-)
LOC103031655 NA coding upstream 206425 18144575 ~ 18149637 (-)
atad3a atad3a,LOC103357928 coding upstream 256657 18194807 ~ 18208696 (-)
crocc LOC108415825 coding upstream 307660 18245810 ~ 18288745 (-)
necap2 necap2,LOC108414094 coding upstream 351291 18289441 ~ 18302232 (-)
G190927 NA non-coding downstream 1688 17923683 ~ 17928468 (-)
G190924 NA non-coding downstream 15749 17913373 ~ 17914407 (-)
G190908 bysl,LOC107572361,LOC107723053,LOC107569751 non-coding downstream 82839 17841514 ~ 17847317 (-)
G190896 srsf3,srsf3b,LOC107569752,LOC107690536,LOC108413700 non-coding downstream 165359 17755943 ~ 17764797 (-)
G190891 LOC108412444 non-coding downstream 183423 17738514 ~ 17746733 (-)
G190931 NA non-coding upstream 11598 17949748 ~ 18008864 (-)
G190933 NA non-coding upstream 36381 17974531 ~ 18071642 (-)
G190936 NA non-coding upstream 56530 17994680 ~ 17995360 (-)
G190982 NA non-coding upstream 251634 18189784 ~ 18191373 (-)
G190949 NA non-coding upstream 255430 18193580 ~ 18217992 (-)
G190788 NA other downstream 710376 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 736409 17181114 ~ 17193747 (-)
cass4 NA other downstream 1060695 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 1330839 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 1469228 16345701 ~ 16460928 (-)
mrpl20 mrpl20 other upstream 201213 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 229090 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 373302 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 770169 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 959359 18897509 ~ 18902285 (-)

Expression


Co-expression Network