LOC111195395


Basic Information

Item Value
gene id LOC111195395
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18167240 ~ 18176164 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258909
TTTTTGATAACTACACTGTAATTCTGTTTGATTAAAACATCTAGcagaatcatttttttttttaaattgccaaAGTCCAACTGTTAGCatatataaaaatctataaGGATATCTAacattatacattaaatatatatctaagaATCAGCTGTTTTAGTTTAGCTAAAAATACAGAATCTTTTTCTTTAATGATATAATTAATGTACAAAAGCAGAAATTAATGTATAGATTCTCTATCCTGGCCTTGTATTCTGTAGAATTACAGTGTAGATATATAGAGATCCAAATTCTAATTTATACTAGAAGGCTTTTAGTAagtttttattagtaaaaataAGTTACAGCTTGTGCTTTTCTAGCTGTTTTATGCCAAATCGGTTCACCATAAACCAACGTGGGTTCCAATCAGgggaatatatttatttataatagaaaagaaataaaaagaaaaaaagaaatttgattttttttcttcctgtgtTTGTAatgatgtgatggtgtgtgtgtgtgtgtgtcctcccCAGGTGCAGAAGCTGTCAGTAGGTATTGAGAGTGATGTCAGGGTGATTGAGTGTGAGGTCAGGGAGGGTGGATGGTGAATGGGTTATTTAGGTCGTATATGGATTTGGATCTGCATCACTGAAGGCAAAACTGAAGATGTCTCTATATCTCCAAATCAGATAATCTTCTGACTTCTGGCTTTAATTATGCAGCTAACTGATTGTGCAATACCTTCCTGAACagctctttatatatatatatatatatatcattcaAACCAAGGATTCTAGGAGTTCTGAGGAGGAGAtatctgtattttctgtttattacagatttatttatagAATGTGGCACATTTAAATGCATGTTCTTATGTAGGaaagatgtatatatatttataattctaattattactgtttttatcgaTAATAAGAATGAAATACTCTTTCAAAACCTGAAGTTTGGAGAGAAGCGATCGTGCTGAGTGAGAGATCCTGCTGTGTGGAATCTGCCGGGATGGCCTGAGGTGGTTGTCGGTGTGTTTCTGTATCAGATCAGATCTGTTCTGCTGGACTGAACAGCAGCCTGACTGAGTGACTGAGCTTCAGAACaggagattgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgaaaatGTCTGTGAGCTCGGGATACAAGTCCTTGTCTTTTCGGACCAGATCGCTGTACATCTGTTCGTAAGTGGTTTTGAAGTCGTACACGTTGGGCTTGTCCGGAGCCGGGCCGGGGAGCTTGACGTGAGTGCCCGTCCCGAACGACCGCACGTCAAAACCACGTTTGc
>XR_002651616.1
GTATCAGATCAGATCTGTTCTGCTGGACTGAACAGCAGCCTGACTGAGTGACTGAGCTTCAGAACaggagattgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258909 True 1320 lncRNA 0.37 2 18167240 18176164
XR_002651616.1 False 101 ncRNA 0.49 2 18167418 18175117

Neighbor

gene id symbol gene type direction distance location
LOC103031655 NA coding downstream 17603 18144575 ~ 18149637 (-)
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding downstream 125737 18022458 ~ 18041503 (-)
LOC103032297 celsr2 coding downstream 147562 17933593 ~ 18019678 (-)
LOC103045494 LOC108415559 coding downstream 286290 17856281 ~ 17880950 (-)
med20 med20 coding downstream 329900 17830616 ~ 17837340 (-)
atad3a atad3a,LOC103357928 coding upstream 18643 18194807 ~ 18208696 (-)
crocc LOC108415825 coding upstream 69646 18245810 ~ 18288745 (-)
necap2 necap2,LOC108414094 coding upstream 113277 18289441 ~ 18302232 (-)
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding upstream 225059 18401223 ~ 18413418 (-)
slc25a20 slc25a20 coding upstream 241060 18417224 ~ 18428759 (-)
G190933 NA non-coding downstream 95598 17974531 ~ 18071642 (-)
G190931 NA non-coding downstream 158376 17949748 ~ 18008864 (-)
G190936 NA non-coding downstream 171880 17994680 ~ 17995360 (-)
G190917 NA non-coding downstream 229090 17930156 ~ 17938150 (-)
G190927 NA non-coding downstream 238772 17923683 ~ 17928468 (-)
G190982 NA non-coding upstream 13620 18189784 ~ 18191373 (-)
G190949 NA non-coding upstream 17416 18193580 ~ 18217992 (-)
G190983 NA non-coding upstream 38584 18214748 ~ 18215095 (-)
G190958 NA non-coding upstream 52826 18228990 ~ 18229662 (-)
G190988 NA non-coding upstream 63930 18240094 ~ 18248374 (-)
G190788 NA other downstream 947460 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 973493 17181114 ~ 17193747 (-)
cass4 NA other downstream 1297779 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 1567923 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 1706312 16345701 ~ 16460928 (-)
LOC103041510 LOC108414096 other upstream 135288 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 532155 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 721345 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1335157 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2923183 21099347 ~ 21103218 (-)

Expression


Co-expression Network