G190949


Basic Information

Item Value
gene id G190949
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18193580 ~ 18217992 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258911
tttcagttaacagctgtgctgaactcgtcaagagttaattacttgaatttcttgtctcttaataaagtgtttgagagcatcagttaaagtaaagtagtgaagaggtagagttacaggtatacagtgaatagtgaatatttgagtaatgttctaatccaggttaagagaagcaacaactactcaaataaataaagaaaaacattatttaaggCAATCCGAAACATTTTAAGAGCTTTGAATGTATGCTCAGATGCAGTCATCGCAAAGACCATCgaaaaaaacgttatgatgatgaaattggcactcatcaggagttaagttaacagctccccagataagagcacctaaatgctaaATTCGTCACAgagtattctggtttgtttttaagttactacatgattccttatgtgttccttcatagtctgatggatcccttcactattcatttactatgtagaaaaaaatatatatataataatagtgtccaaacttttgactggtatatTGTAGCTGTGATTCACCAGGGCTGTTTAAACTGTGCcgatatataatatactactCTTACTTGCTGAGGTTTGATCCTTAAGAAAGATCTAAATATGGCTACATCTACATCTTGCAATTTAACCCCAATATCTGAATCTCACAGGGAGTGATTTTGGACGGTCTgttcgtgtctgtgtgtggtcagtagtgatGGACGGAGGGGTTTTTGGGggggaaaaatgtaaaagaagatTTAAAACTTAAGTGAAATGTTGAATGTGTTGTATGTGTAATGGATCTCATGTACATTATCTGTTAAAACgtcaaaagaaaaactgaaaacgTCTGAAAAGGAAACTGTAATGAGCTGGAAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258911 True 862 lncRNA 0.35 3 18193580 18217992

Neighbor

gene id symbol gene type direction distance location
LOC103031655 NA coding downstream 43943 18144575 ~ 18149637 (-)
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding downstream 152077 18022458 ~ 18041503 (-)
LOC103032297 celsr2 coding downstream 173902 17933593 ~ 18019678 (-)
LOC103045494 LOC108415559 coding downstream 312630 17856281 ~ 17880950 (-)
med20 med20 coding downstream 356240 17830616 ~ 17837340 (-)
crocc LOC108415825 coding upstream 27818 18245810 ~ 18288745 (-)
necap2 necap2,LOC108414094 coding upstream 71449 18289441 ~ 18302232 (-)
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding upstream 183231 18401223 ~ 18413418 (-)
slc25a20 slc25a20 coding upstream 199232 18417224 ~ 18428759 (-)
nckipsd nckipsd coding upstream 216543 18434535 ~ 18450707 (-)
G190982 NA non-coding downstream 2207 18189784 ~ 18191373 (-)
G190933 NA non-coding downstream 121938 17974531 ~ 18071642 (-)
G190931 NA non-coding downstream 184716 17949748 ~ 18008864 (-)
G190936 NA non-coding downstream 198220 17994680 ~ 17995360 (-)
G190917 NA non-coding downstream 255430 17930156 ~ 17938150 (-)
G190958 NA non-coding upstream 10998 18228990 ~ 18229662 (-)
G190988 NA non-coding upstream 22102 18240094 ~ 18248374 (-)
G190990 NA non-coding upstream 92484 18310476 ~ 18360755 (-)
G190997 NA non-coding upstream 144089 18362081 ~ 18367210 (-)
G191003 NA non-coding upstream 159648 18377640 ~ 18378194 (-)
LOC111195395 NA other downstream 17416 18167240 ~ 18176164 (-)
G190788 NA other downstream 973800 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 999833 17181114 ~ 17193747 (-)
cass4 NA other downstream 1324119 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 1594263 16569623 ~ 16599317 (-)
LOC103041510 LOC108414096 other upstream 93460 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 490327 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 679517 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1293329 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2881355 21099347 ~ 21103218 (-)

Expression


Co-expression Network