mrpl20 (mrpl20)


Basic Information

Item Value
gene id mrpl20
gene name mrpl20
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18139363 ~ 18213530 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258917
AGCAGGTAAAGGTGATATCATCTGTTGTAATTATGTGTTATTTAATGTTGCAGCACTTCAGGGGCAGAAAGAACCGCTGCTATAAGCTGGCGGTGCGAACCGTCTGCAGGGCCTTCGTCTACGCAACCAAGGCCAGGAAGGTCAAACGACGCAGCATGAGAACGTTGTGGATATCTCGTATCGCTGCAGCTTCTCGTGAGCATGGACTGAAATACCCAGCGTTAATACATAACCTTGTAAAAAGCAGCGTTCAGTTAAACCGGCGGATTCTGAGCGACCTGGCGATCACAGAGCCGCGGACGTTCCAGGCTTTGGCGACGTTGGCGCGGGCGCGGCAGCAGGAGGGTCTGCGGGCGGCGCTGGGCGACGGGACAGAGCCGACGGGTGTGTTCTCACGTATCACACAGCTGCAGTGATTGGCTcttctctcagccaatcacagagcacTTATCAATACCAAATCTCCATGAAGCTCCAGAACAACCGAACCCTCGAACCCTCCTGCAGCTCCAGCAGAACCAAGACCTTCAACCTGAGATGTACTTAAACCTGATTCTGTACCACTGTTTTCTTTTAAGGTTCTCCAGCATCCAAATAGTGCCCTGATATGACCTGGTACCATAATGAACCATGGTTTTCACTAAAGTCCTCTACTTTAAAAGGACcccattttcttgtttttttttcccatatatGTACTTACTGTGAGCgtcctgaccaatcacagatcCAGATCCATTTCCAGAGTTTAAATGGGTGATATTAAACATCATCATTACTGATTCTAAAGTGTGTATTTTACTATACTTTTCTCCATAGCAATGCGTATCACAGTATGTAGCAATAAGATTGCCATAACAGTATTTAAACAATTCCGTTTAAACAAGCCCCTCACCTTGCCCCATTCAGGCTCCGCCCACCAATTACCTTAtccttttatatttactgttaccTGACTGgacaagctttttaaaatgcagGTAAAACCCTGAAAGGAAGGCTTTATCACAACACCTACATTTAAGGCCCTTTTACACTGTATCCTGCACAAATCCTAGTCTGTTCGTTTTCCTCTTATAACTAGAATTATAGGAGGAAGATAAAGAGAGCAGAAAAAGGAGCAGAAATCAGATAGATAAAATGAAACAATTACATTTTTCGACACATTTGTGCAGGATTTACtatgttaaaaatgtatctgttttttttttgttaacaggCCTTTCGAATTTAATCATtattctgtacatttaattAAGCATTTTGTAAAGCTTGTCACAATTCACAACAGTAGTTAAAAAGATTTCCTAAAGTACAGATTAGGAGACGGAGCCTGAGGTTATTTACCCTCTATTGAGGTACATTATCAAAATTGTACAGACTCTGGGGGACTTTTGGGGGACTTTTTCAGTGACAATTCTAAAAGACAGACTCTGGAGAACTGAGATACGCTGCACTGCAGGGTTTACAAACGTGTTTGAGCATAAAAAACATTACACTGTTATAATGCAGCATTTCAGTGTGAAACAGAGCATGAATAGGGGTCAGAGATTTGTACGTGAATGGTTGGTTGGTGATTCATATTGGAGAAGGCCTGTGAGTGGAGTGGAGAAGTGCAAGGGAATGTACTTATTTTGGTTTGAAATGTGTGATTGTATGTTGTATGTTATTGTGTCTGTAAATATATGTGCCATTTTCTGTTCCTGTTAATAAATTGTTTTCCTATTTAAAATaaaaaaaaaaaaaaaaa
>XM_022682522.1
TTTAATGTTGCAGCACTTCAGGGGCAGAAAGAACCGCTGCTATAAGCTGGCGGTGCGAACCGTCTGCAGGGCCTTCGTCTACGCAACCAAGGCCAGGAAGGTCAAACGACGCAGCATGAGAACGTTGTGGATATCTCGTATCGCTGCAGCTTCTCGTGAGCATGGACTGAAATACCCAGCGTTAATACATAACCTTGTAAAAAGCAGCGTTCAGTTAAACCGGCGGATTCTGAGCGACCTGGCGATCACAGAGCCGCGGACGTTCCAGGCTTTGGCGACGTTGGCGCGGGCGCGGCAGCAGGAGGGTCTGCGGGCGGCGCTGGGCGACGGGACAGAGCCGACGGGTGTGTTCTCACGTATCACACAGCTGCAGTGATTGGCTcttctctcagccaatcacagagcacTTATCAATACCAAATCTCCATGAAGCTCCAGAACAACCGAACCCTCGAACCCTCCTGCAGCTCCAGCAGAACCAAGACCTTCAACCTGAGATGTACTTAAACCTGATTCTGTACCACTGTTTTCTTTTAAGGTTCTCCAGCATCCAAATAGTGCCCTGATATGACCTGGTACCATAATGAACCATGGTTTTCACTAAAGTCCTCTACTTTAAAAGGACcccattttcttgtttttttttcccatatatGTACTTACTGTGAGCgtcctgaccaatcacagatcCAGATCCATTTCCAGAGTTTAAATGGGTGATATTAAACATCATCATTACTGATTCTAAAGTGTGTATTTTACTATACTTTTCTCCATAGCAATGCGTATCACAGTATGTAGCAATAAGATTGCCATAACAGTATTTAAACAATTCCGTTTAAACAAGCCCCTCACCTTGCCCCATTCAGGCTCCGCCCACCAATTACCTTAtccttttatatttactgttaccTGACTGgacaagctttttaaaatgcagGTAAAACCCTGAAAGGAAGGCTTTATCACAACACCTACATTTAAGGCCCTTTTACACTGTATCCTGCACAAATTTAACAGAGGCATTTAAATcaggctgaccaatcagaacGAGAGGCCTATAACTGCAGACCAAACAAATTATACTGAAGCTGCAGAAGAGAGCTTCTAATCTCTAATCAGcacacaatataaaaatgtggagttgaaattaataaattccAAAGGAAAAAGCCAAGTGTGTCGATGTTTTATACAATTTGTCTCGTAGCATCCTAGTCTGTTCGTTTTCCTCTTATAACTAGAATTATAGGAGGAAGATAAAGAGAGCAGAAAAAGGAGCAGAAATCAGATAGATAAAATGAAACAATTACATTTTTCGACACATTTGTGCAGGATTTACtatgttaaaaatgtatctgttttttttttgttaacaggCCTTTCGAATTTAATCATtattctgtacatttaattAAGCATTTTGTAAAGCTTGTCACAATTCACAACAGTAGTTAAAAAGATTTCCTAAAGTACAGATTAGGAGACGGAGCCTGAGGTTATTTACCCTCTATTGAGGTACATTATCAAAATTGTACAGACTCTGGGGGACTTTTGGGGGACTTTTTCAGTGACAATTCTAAAAGACAGACTCTGGAGAACTGAGATACGCTGCACTGCAGGGTTTACAAACGTGTTTGAGCATAAAAAACATTACACTGTTATAATGCAGCATTTCAGTGTGAAACAGAGCATGAATAGGGGTCAGAGATTTGTACGTGAATGGTTGGTTGGTGATTCATATTGGAGAAGGCCTGTGAGTGGAGTGGAGAAGTGCAAGGGAATGTACTTATTTTGGTTTGAAATGTGTGATTGTATGTTGTATGTTATTGTGTCTGTAAATATATGTGCCATTTTCTGTTCCTGTTAATAAATTGTTTTCCTATTTAAAATCTT

Function

symbol description
mrpl20 Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal large subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Orthologous to human MRPL20 (mitochondrial ribosomal protein L20).

NR:

description
39S ribosomal protein L20, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02887 RP-L20, MRPL20, rplT; large subunit ribosomal protein L20

RNA

RNA id representative length rna type GC content exon number start site end site
TU258917 False 1750 TUCP 0.41 5 18139363 18213530
XM_022682522.1 True 1896 mRNA 0.41 3 18210016 18213490

Neighbor

gene id symbol gene type direction distance location
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding downstream 97860 18022458 ~ 18041503 (-)
LOC103032297 celsr2 coding downstream 119685 17933593 ~ 18019678 (-)
LOC103045494 LOC108415559 coding downstream 258413 17856281 ~ 17880950 (-)
med20 med20 coding downstream 302023 17830616 ~ 17837340 (-)
LOC103032918 usp49 coding downstream 309791 17815209 ~ 17829572 (-)
crocc LOC108415825 coding upstream 32280 18245810 ~ 18288745 (-)
necap2 necap2,LOC108414094 coding upstream 75911 18289441 ~ 18302232 (-)
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding upstream 187693 18401223 ~ 18413418 (-)
slc25a20 slc25a20 coding upstream 203694 18417224 ~ 18428759 (-)
nckipsd nckipsd coding upstream 221005 18434535 ~ 18450707 (-)
G190933 NA non-coding downstream 67721 17974531 ~ 18071642 (-)
G190931 NA non-coding downstream 130499 17949748 ~ 18008864 (-)
G190936 NA non-coding downstream 144003 17994680 ~ 17995360 (-)
G190917 NA non-coding downstream 201213 17930156 ~ 17938150 (-)
G190927 NA non-coding downstream 210895 17923683 ~ 17928468 (-)
G190983 NA non-coding upstream 1218 18214748 ~ 18215095 (-)
G190958 NA non-coding upstream 15460 18228990 ~ 18229662 (-)
G190988 NA non-coding upstream 26564 18240094 ~ 18248374 (-)
G190990 NA non-coding upstream 96946 18310476 ~ 18360755 (-)
G190997 NA non-coding upstream 148551 18362081 ~ 18367210 (-)
G190788 NA other downstream 919583 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 945616 17181114 ~ 17193747 (-)
cass4 NA other downstream 1269902 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 1540046 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 1678435 16345701 ~ 16460928 (-)
LOC103041510 LOC108414096 other upstream 97922 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 494789 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 683979 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1297791 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2885817 21099347 ~ 21103218 (-)

Expression


Co-expression Network