G190958


Basic Information

Item Value
gene id G190958
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18228990 ~ 18229662 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258924
GTCTTTTTGCTGCCAACACTGACTGATATAAGCTTTTCTTCGTCACTGTAATAAATGGATAAACTCATAGCTATGTATTGGATAGTAATTTGGAAATAAAAGGCGGGACTGCAGAGCTGTGGAcgtaatgcatttatttattacacaaaACTGATCTCCTATAGAAGCGGGAGGAGACTGTATAGTATGTGCTGACCagaccacacccacacacacctgtgCTGCACACCTGTCTTCATATACACATGAACTGTGTCTACGTAACCATATAACAGACAGTAATGAAGGAATGCAGAAtccattaaattaacatttatgtaacttctcttatatacacacacacacacacacactcacacacacatacactgatcAGTCTGCTGTATTGTGGAGTGGTAGGAGGCTGTGCTGGGTGTGTGTGGATGGTTAGGCTGGGTCAGGAAGCTGGTTACATATCTCCGAGTATGTCAGTACTGTAtactgatattgtgatattgttgcTATGGACTGTTGCTATGGAGGGCTGGACTGCAGATCACGCAGTGGCTGCTTTCTTCTCTTTATACGTGGCCATCATCTTCTTTATCTCTGCGATGGCCTTCCCCGGATTCAGACCCTGCAAAAACAGATACGGTTAGAGACGTATCCGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258924 True 651 lncRNA 0.43 2 18228990 18229662

Neighbor

gene id symbol gene type direction distance location
atad3a atad3a,LOC103357928 coding downstream 20294 18194807 ~ 18208696 (-)
LOC103031655 NA coding downstream 79353 18144575 ~ 18149637 (-)
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding downstream 187487 18022458 ~ 18041503 (-)
LOC103032297 celsr2 coding downstream 209312 17933593 ~ 18019678 (-)
LOC103045494 LOC108415559 coding downstream 348040 17856281 ~ 17880950 (-)
crocc LOC108415825 coding upstream 16148 18245810 ~ 18288745 (-)
necap2 necap2,LOC108414094 coding upstream 59779 18289441 ~ 18302232 (-)
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding upstream 171561 18401223 ~ 18413418 (-)
slc25a20 slc25a20 coding upstream 187562 18417224 ~ 18428759 (-)
nckipsd nckipsd coding upstream 204873 18434535 ~ 18450707 (-)
G190949 NA non-coding downstream 10998 18193580 ~ 18217992 (-)
G190983 NA non-coding downstream 13895 18214748 ~ 18215095 (-)
G190982 NA non-coding downstream 37617 18189784 ~ 18191373 (-)
G190933 NA non-coding downstream 157348 17974531 ~ 18071642 (-)
G190931 NA non-coding downstream 220126 17949748 ~ 18008864 (-)
G190988 NA non-coding upstream 10432 18240094 ~ 18248374 (-)
G190990 NA non-coding upstream 80814 18310476 ~ 18360755 (-)
G190997 NA non-coding upstream 132419 18362081 ~ 18367210 (-)
G191003 NA non-coding upstream 147978 18377640 ~ 18378194 (-)
G191025 NA non-coding upstream 272840 18502502 ~ 18505375 (-)
mrpl20 mrpl20 other downstream 15460 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 52826 18167240 ~ 18176164 (-)
G190788 NA other downstream 1009210 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 1035243 17181114 ~ 17193747 (-)
cass4 NA other downstream 1359529 16833850 ~ 16869461 (-)
LOC103041510 LOC108414096 other upstream 81790 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 478657 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 667847 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1281659 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2869685 21099347 ~ 21103218 (-)

Expression


Co-expression Network