LOC103041510 (LOC108414096)


Basic Information

Item Value
gene id LOC103041510
gene name LOC108414096
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18311452 ~ 18315337 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258958
AAGCAGCGCTCCGAGGCCCCGAAACTAAAAGTAGTCGGGACTGATTTAGCCGGAGTTACGGAGCTGAATTAAAGTAAGGATGGAGGATGAGGACGTGTCGGATAACTGGGAGGACGCGGCGGACAGCGGGGAGATTGAGAGACGACTGGAGGCGAAACTGAAGATCAGTCAAAAATCTAATAACCAAAGTTTGCCTGTTAAAACTGCGGTGGTGATTCAAGACGATTCGCTGCCTGCAGCCCCGCCTCCACAGATCCGGATCCTGAAGCGACCCCCCCAGCAATGGCTCTCTGGGGCAGCAGGTGGCGTCGCGACCGGCGCAGCAGGTGAAGTCTCTGGCTCAGAGAGAGGCGGAGTACGCTGAGGCCCGAAAGAGGATTTTGGGGAGTGCTGAAGAACCATCTCAGGACAGGCCAGATGCAGACagacCCGCCATCACCAGTGCTCCTTCGGAATCTCTGCGGCCAAACAATCACATAATCCGCCAACCACTGGGGCCGGACGGCACCGCAGGCTTCCGCCTCAgcagatagaaagaaagaaagagagagagagggcgagagacatggaggtagagagagggtgaatgagcaagagagagaaagagatgaagatGCTATCTTGTGCAGAAGGGAGTTTTAACAGTATGGAGACAGACTTAACGTAGGTTTTGAGGAACAGAGGAGCATGAGCTTGCCTGCTTTGCTCCGAACCTCATCTcctttcctttttcttcttctttcctgCTGGATGTGCAGAGACAGCACCTCCGGGGAAGAAGGGATGAAGCCAAAGCGTCTCTCTGGCTGGGCCATGCTATGACAGggccatttctctctctgttttaggACTCTATACACTGTGCATTTCCTCAGTAACACTCCCCTTTGTCACGTTTTGGAGTTTGAGGCGCTCCAGGGTGGAGGGGATAGGTGTGATAAAGCCCCAGTCAGGAGTTGCTGCAGCTGAGAAAGCAGCAGTTTTAGCATTGTATTACAAACAGAAGACGCATTAGAATAAAGCCAGGGCTATTCTAATGAAGGCTGCGGGCATTGCTTTAAGCAAGTACACACGCCCGCTGTAATATGTGAGCTACAGTTGGCACGATATCACCTTTTTGTCTTTTCTGATACTGAAAACGTAAGTATTGTCTGATACTCAAGTGTATATTgaatgatatatttattttgtttaaaaagtgctaagatgtaaaatgaactttatatatttgtaaaatgtgCTCAAGCTGTACTATCCCACACTTTTTGTGGGTTACAGTGTGAAGTTATTATATGGTTACTGATATCACATAGCATACTATCTGACAGAACTGGATCTGAATTCCTGATCCAGAATTTTCTGCTGCTTTTGGCTGAATACCAGCGTGCCATCACTAATTTATACATGCTAGACATATAATATAGTTCTTACCATGATTAATACTAGTATTTTTCTGCTCCAAATCACCCGTAAAAACTACCTATTTGCAAGTTCAtctatttaaaggagaactctggtgt
>XM_007256688.2
AGGGAACTTGTTATAAGAAGAGTTCAGAGCTTAAATGAGTGTGTAAGTTTAGCTAAAAGTTTCACACCTAATTGCTCTCCTCAGTTCTGTTCTTCTGCTCTATTCGTAACCGTTTATTCTTGCAGAAATGTTGAGGTTTTGATGAATTTTCTCTTTAAACCCGCTGCACTGTGTGTAGAGTAGAGAGGGTATCCCCAGGGCACGCGGGCGCCACCAGGCGGGGGGAATAAGCAGCGCTCCGAGGCCCCGAAACTAAAAGTAGTCGGGACTGATTTAGCCGGAGTTACGGAGCTGAATTAAAGTAAGGATGGAGGATGAGGACGTGTCGGATAACTGGGAGGACGCGGCGGACAGCGGGGAGATTGAGAGACGACTGGAGGCGAAACTGAAGATCAGTCAAAAATCTAATAACCAAAGTTTGCCTGTTAAAACTGCGGTGGTGATTCAAGACGATTCGCTGCCTGCAGCCCCGCCTCCACAGATCCGGATCCTGAAGCGACCCCCCAGCAATGGCTCTCTGGGGCAGCAGGTGGCGTCGCGACCGGCGCAGCAGGTGAAGTCTCTGGCTCAGAGAGAGGCGGAGTACGCTGAGGCCCGAAAGAGGATTTTGGGGAGTGCTGAAGAACCATCTCAGGACAGGCCAGATGCAGACagacCCGCCATCACCAGTGCTCCTTCGGAATCTCTGCGGCCAAACAATCACATAATCCGCCAACCACTGGGGCCGGACGGCACCGCAGGCTTCCGCCTCAgcagatagaaagaaagaaagagagagagagggcgagagacatggaggtagagagagggtgaatgagcaagagagagaaagagatgaagatGCTATCTTGTGCAGAAGGGAGTTTTAACAGTATGGAGACAGACTTAACGTAGGTTTTGAGGAACAGAGGAGCATGAGCTTGCCTGCTTTGCTCCGAACCTCATCTcctttcctttttcttcttctttcctgCTGGATGTGCAGAGACAGCACCTCCGGGGAAGAAGGGATGAAGCCAAAGCGTCTCTCTGGCTGGGCCATGCTATGACAGggccatttctctctctgttttaggACTCTATACACTGTGCATTTCCTCAGTAACACTCCCCTTTGTCACGTTTTGGAGTTTGAGGCGCTCCAGGGTGGAGGGGATAGGTGTGATAAAGCCCCAGTCAGGAGTTGCTGCAGCTGAGAAAGCAGCAGTTTTAGCATTGTATTACAAACAGAAGACGCATTAGAATAAAGCCAGGGCTATTCTAATGAAGGCTGCGGGCATTGCTTTAAGCAAGTACACACGCCCGCTGTAATATGTGAGCTACAGTTGGCACGATATCACCTTTTTGTCTTTTCTGATACTGAAAACGTAAGTATTGTCTGATACTCAAGTGTATATTgaatgatatatttattttgtttaaaaagtgctaagatgtaaaatgaactttatatatttgtaaaatgtgCTCAAGCTGTACTATCCCACACTTTTTGTGGGTTACAGTGTGAAGTTATTATATGGTTACTGATATCACATAGCATACTATCTGACAGAACTGGATCTGAATTCCTGATCCAGAATTTTCTGCTGCTTTTGGCTGAATACCAGCGTGCCATCACTAATTTATACATGCTAGACATATAATATAGTTCTTACCATGATTAATACTAGTATTTTTCTGCTCCAAATCACCCGTAAAAACTACCTATTTGCAAGTTCAtctatttaaaggagaactctggtgtaaaattgacttttggtgtagtaaaacatgataaaaagtactttttttgttgaat

Function

NR:

description
PREDICTED: SUZ domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258958 False 1520 TUCP 0.47 4 18311506 18315109
XM_007256688.2 True 1801 mRNA 0.46 5 18311452 18315337

Neighbor

gene id symbol gene type direction distance location
necap2 necap2,LOC108414094 coding downstream 9220 18289441 ~ 18302232 (-)
crocc LOC108415825 coding downstream 22707 18245810 ~ 18288745 (-)
atad3a atad3a,LOC103357928 coding downstream 102756 18194807 ~ 18208696 (-)
LOC103031655 NA coding downstream 161815 18144575 ~ 18149637 (-)
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding downstream 269949 18022458 ~ 18041503 (-)
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding upstream 85886 18401223 ~ 18413418 (-)
slc25a20 slc25a20 coding upstream 101887 18417224 ~ 18428759 (-)
nckipsd nckipsd coding upstream 119198 18434535 ~ 18450707 (-)
LOC103038600 LOC108444099 coding upstream 141252 18456589 ~ 18467052 (-)
LOC103029431 LOC108254710,LOC108444098,LOC103385834 coding upstream 168078 18483415 ~ 18488577 (-)
G190988 NA non-coding downstream 63078 18240094 ~ 18248374 (-)
G190958 NA non-coding downstream 81790 18228990 ~ 18229662 (-)
G190949 NA non-coding downstream 93460 18193580 ~ 18217992 (-)
G190983 NA non-coding downstream 96357 18214748 ~ 18215095 (-)
G190982 NA non-coding downstream 120079 18189784 ~ 18191373 (-)
G190997 NA non-coding upstream 46744 18362081 ~ 18367210 (-)
G191003 NA non-coding upstream 62303 18377640 ~ 18378194 (-)
G191025 NA non-coding upstream 187165 18502502 ~ 18505375 (-)
G191078 NA non-coding upstream 356126 18671463 ~ 18675406 (-)
LOC111195398 NA non-coding upstream 388068 18703405 ~ 18721914 (-)
mrpl20 mrpl20 other downstream 97922 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 135288 18167240 ~ 18176164 (-)
G190788 NA other downstream 1091672 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 1117705 17181114 ~ 17193747 (-)
cass4 NA other downstream 1441991 16833850 ~ 16869461 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 392982 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 582172 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1195984 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2784010 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 3114679 21430016 ~ 21436453 (-)

Expression


Co-expression Network