G190997


Basic Information

Item Value
gene id G190997
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18362081 ~ 18367210 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258970
CCGGGCTGTTCTCCTGTTTGTGCTGGCGCGTGTTCCCCCCTCTGGTCAGTGCCGGGTCGGGACGAGTGTTAGTGGCAGGGTGTGTGTTCCCCGCTCTGGTCAGTGCCGGGTCGGGACGAGTGTTAGTGGCAGGGTGTGTGTTCCCCGCTCTGGTCAGTGCCGGGTCGGGACGAGTGTTAGTGGCATGGTGTGTGTTCCCCGCTCTGGTCAGTGCCGGGTCGGGACGAGTGTTAGTGGCAGGGTGTGAGTTCCCCGCTCTGGTCAGTGCCGGGTCTGGATAAGTGTTTGTGGCAGGAGACAGAGGGCCGGGCCTGGCCTGGGCTCGGAGGGGGCTGGCGGGGGTGGTTGAGCTGGTGGCGGTGATGTCCTGGGACGTGCTGGGCGAGGAGGAGGGTCTCCTCAGCGTGCCGGAGGGGCTGAGGGGAACAGCAGGGTGCTGGATTTGGGGCGTGGGGGTCAGGATCTGCGGGGTGGGAGTGACGGTGGCTCTGTAGGGAGAGGCCAGAGTGATGAAGACCGAGGAGACCATCCTCTTCTGAGGGGCAGCGGAGGCCATAGtgctga
>TU258971
CCGGGCTGTTCTCCTGTTTGTGCTGGCGCGTGTTCCCCCCTCTGGTCAGTGCCGGGTCGGGACGAGTGTTAGTGGCAGGGTGTGTGTTCCCCGCTCTGGTCAGTGCCGGGTCGGGACGAGTGTTAGTGGCAGGGTGTGTGTTCCCCGCTCTGGTCAGTGCCGGGTCGGGACGAGTGTTAGTGGCATGGTGTGTGTTCCCCGCTCTGGTCAGTGCCGGGTCGGGACGAGTGTTAGTGGCAGGGTGTGAGTTCCCCGCTCTGGTCAGTGCCGGGTCTGGATAAGTGTTTGTGGCAGGAGACAGAGGGCCGGGCCTGGCCTGGGCTCGGAGGGGGCTGGCGGGGGTGGTTGAGCTGGTGGCGGTGATGTCCTGGGACGTGCTGGGCGAGGAGGAGGGTCTCCTCAGCGTGCCGGAGGGGCTGAGGGGAACAGCAGGGTGCTGGATTTGGGGCGTGGGGGTCAGGATCTGCGGGGTGGGAGTGACGGTGGCTCTGTAGGGAGAGGCCAGAGTGATGAAGACCGAGGAGACCATCCTCTTCTGAGGGGCAGCGGAGGCCATAGtgCTGAGATACGTTCttcctccgtctctctctctatccttttctctctccctctcttttttctttcgttctttctgctgtttctcctcctctttctctctctctctctctctctctctctctttctctctctacttttctaCTACTGGCCCTCCTTATCCTATTGTCACTCccagacagtcagagagaatgagagagagagagagagagagagagagaaagagaaagagagagagagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258970 False 564 lncRNA 0.66 2 18366593 18367210
TU258971 True 796 lncRNA 0.60 3 18362081 18367210

Neighbor

gene id symbol gene type direction distance location
necap2 necap2,LOC108414094 coding downstream 59849 18289441 ~ 18302232 (-)
crocc LOC108415825 coding downstream 73336 18245810 ~ 18288745 (-)
atad3a atad3a,LOC103357928 coding downstream 153385 18194807 ~ 18208696 (-)
LOC103031655 NA coding downstream 212444 18144575 ~ 18149637 (-)
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding downstream 320578 18022458 ~ 18041503 (-)
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding upstream 34013 18401223 ~ 18413418 (-)
slc25a20 slc25a20 coding upstream 50014 18417224 ~ 18428759 (-)
nckipsd nckipsd coding upstream 67325 18434535 ~ 18450707 (-)
LOC103038600 LOC108444099 coding upstream 89379 18456589 ~ 18467052 (-)
LOC103029431 LOC108254710,LOC108444098,LOC103385834 coding upstream 116205 18483415 ~ 18488577 (-)
G190990 NA non-coding downstream 1326 18310476 ~ 18360755 (-)
G190988 NA non-coding downstream 113707 18240094 ~ 18248374 (-)
G190958 NA non-coding downstream 132419 18228990 ~ 18229662 (-)
G190949 NA non-coding downstream 144089 18193580 ~ 18217992 (-)
G190983 NA non-coding downstream 146986 18214748 ~ 18215095 (-)
G191003 NA non-coding upstream 10430 18377640 ~ 18378194 (-)
G191025 NA non-coding upstream 135292 18502502 ~ 18505375 (-)
G191078 NA non-coding upstream 304253 18671463 ~ 18675406 (-)
LOC111195398 NA non-coding upstream 336195 18703405 ~ 18721914 (-)
G191095 NA non-coding upstream 356821 18724031 ~ 18726062 (-)
LOC103041510 LOC108414096 other downstream 46744 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 148551 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 185917 18167240 ~ 18176164 (-)
G190788 NA other downstream 1142301 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 1168334 17181114 ~ 17193747 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 341109 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 530299 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1144111 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2732137 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 3062806 21430016 ~ 21436453 (-)

Expression


Co-expression Network