Gene
RNA
| Item | Value |
|---|---|
| gene id | G72204 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 5293773 ~ 5302206 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: catenin beta-1 |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU82349 | True | 8346 | TUCP | 0.38 | 2 | 5293773 | 5302206 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_05131253_05139664 | CNIH1, MGC85215, CNIH1.S | coding | downstream | 154098 | 5131030 ~ 5139675 (-) |
| CI01000012_05118797_05123143 | NA | coding | downstream | 170630 | 5118332 ~ 5123143 (-) |
| CI01000012_05112839_05116264 | NA | coding | downstream | 177509 | 5111405 ~ 5116264 (-) |
| CI01000012_05091184_05092014 | NA | coding | downstream | 201759 | 5091021 ~ 5092014 (-) |
| CI01000012_05079456_05083333 | ATP5S | coding | downstream | 210440 | 5079247 ~ 5083333 (-) |
| CI01000012_05414096_05416676 | TTC9 | coding | upstream | 111163 | 5413369 ~ 5416780 (-) |
| CI01000012_05568600_05606181 | NA | coding | upstream | 266394 | 5568600 ~ 5606181 (-) |
| CI01000012_05609848_05631772 | NA | coding | upstream | 306627 | 5608833 ~ 5631932 (-) |
| CI01000012_05672517_05674075 | NA | coding | upstream | 370023 | 5672229 ~ 5675834 (-) |
| CI01000012_05680930_05690904 | KCNK1B, KCNK1 | coding | upstream | 377831 | 5680037 ~ 5690904 (-) |
| G72208 | NA | non-coding | downstream | 59566 | 5233364 ~ 5234207 (-) |
| G72073 | NA | non-coding | downstream | 112716 | 5177582 ~ 5181057 (-) |
| G72111 | NA | non-coding | downstream | 119040 | 5174121 ~ 5174733 (-) |
| G72114 | NA | non-coding | downstream | 125398 | 5167522 ~ 5168375 (-) |
| G72174 | NA | non-coding | downstream | 224903 | 5067762 ~ 5068870 (-) |
| G72229 | NA | non-coding | upstream | 11022 | 5313228 ~ 5313478 (-) |
| G72232 | NA | non-coding | upstream | 17022 | 5319228 ~ 5319443 (-) |
| G72234 | NA | non-coding | upstream | 21400 | 5323606 ~ 5323833 (-) |
| G72239 | NA | non-coding | upstream | 77060 | 5379266 ~ 5381670 (-) |
| G72292 | NA | non-coding | upstream | 148112 | 5450318 ~ 5451746 (-) |
| G72068 | NA | other | downstream | 513641 | 4776220 ~ 4780132 (-) |
| G71898 | NA | other | downstream | 759101 | 4533530 ~ 4534672 (-) |
| G70774 | NA | other | downstream | 2426881 | 2866508 ~ 2866892 (-) |
| G69562 | NA | other | downstream | 3917475 | 1332075 ~ 1376298 (-) |
| CI01000012_01139864_01192154 | TTC7A | other | downstream | 4142575 | 1135676 ~ 1192154 (-) |
| G72294 | NA | other | upstream | 160634 | 5462840 ~ 5465857 (-) |
| G72629 | NA | other | upstream | 844805 | 6147011 ~ 6147494 (-) |
| CI01000012_07356934_07358497 | NA | other | upstream | 2053046 | 7356863 ~ 7358612 (-) |
| G74648 | NA | other | upstream | 2962123 | 8264329 ~ 8265654 (-) |
