G191077


Basic Information

Item Value
gene id G191077
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18728839 ~ 18729268 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU259154
CTTCTTGATCTTCTCATCAGACTGCTGCTTGTCATTCTCCAGGTCCATTATGGACTCCTGGGCCAGTTTCAAGTCACCCTCAAGCTTCCTCTTAGCTCTCTCCAGGTCCATGCGGAGTTTCTTCTCTTGCTCCAGTGAACCTTCAATCATCCACTTGTTGTTCAAGCTTTGTCTTGGCTTTGGTCAGAGTGTTGACTTTGTCTTCCTCTgcctggagatcatcaagagtCTGCTGGTGTGACTCTTGGAGTGCTTTCTTTTCCTTGGTGAGTTTGGCAACGCTCTCATCCTGAGAGGCCATTTCCTCAGTCAGGTTCTTCACCTGTGTGAagac

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko00500 Starch and sucrose metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU259154 True 334 lncRNA 0.49 2 18728839 18729268

Neighbor

gene id symbol gene type direction distance location
LOC103038294 LOC108444096 coding downstream 237391 18488677 ~ 18491448 (-)
LOC103029431 LOC108254710,LOC108444098,LOC103385834 coding downstream 240262 18483415 ~ 18488577 (-)
LOC103038600 LOC108444099 coding downstream 261787 18456589 ~ 18467052 (-)
nckipsd nckipsd coding downstream 278132 18434535 ~ 18450707 (-)
slc25a20 slc25a20 coding downstream 300080 18417224 ~ 18428759 (-)
cacna2d2 cacna2d2,cacna2d2b,LOC107655410 coding upstream 70661 18799929 ~ 18844551 (-)
acy1 acy1,LOC107575257,LOC107655273 coding upstream 120632 18849900 ~ 18861224 (-)
abhd14a abhd14a,LOC107586929,LOC107756017,LOC107704435,LOC107593054 coding upstream 133297 18862565 ~ 18870053 (-)
LOC103032073 NA coding upstream 142983 18872251 ~ 18893531 (-)
LOC103033109 LOC103033109,LOC108443914 coding upstream 174149 18903417 ~ 18920755 (-)
G191095 NA non-coding downstream 2777 18724031 ~ 18726062 (-)
LOC111195398 NA non-coding downstream 6925 18703405 ~ 18721914 (-)
G191078 NA non-coding downstream 53433 18671463 ~ 18675406 (-)
G191025 NA non-coding downstream 223464 18502502 ~ 18505375 (-)
G191003 NA non-coding downstream 350645 18377640 ~ 18378194 (-)
G191079 NA non-coding upstream 3290 18732558 ~ 18752026 (-)
G191074 NA non-coding upstream 19695 18748963 ~ 18778171 (-)
G191075 LOC108443907,LOC108271865,LOC108444093,LOC108254800,LOC108443910,LOC108440470 non-coding upstream 46384 18775652 ~ 18788885 (-)
G191296 NA non-coding upstream 316138 19045406 ~ 19099824 (-)
G191321 NA non-coding upstream 465659 19194927 ~ 19196386 (-)
LOC103041510 LOC108414096 other downstream 413502 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 515309 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 552675 18167240 ~ 18176164 (-)
G190788 NA other downstream 1509059 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 1535092 17181114 ~ 17193747 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 168241 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 782053 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2370079 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2700748 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 2781656 21510924 ~ 21544831 (-)

Expression


Co-expression Network