G191078


Basic Information

Item Value
gene id G191078
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18671463 ~ 18675406 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU259155
aaTCCGATGTAAAATTGAACTGGGGTTGTACTGAAACATGATAAAGTTAGTACAAACTTTTATCAAATAGTCCATCTTTGTTCTCCCCCAGATTTCCCAAATACGGAGCTTTTAGCCGccgctcccaacaggcttacaatgctagtgataggggcatagagctgtccatgcaaagaaatcactattttgcaCACAATTAACAGACTTATAGTAATTTCACACTTTATTGGTGGAATTCTGAAGGCCCTTTTAAAATAAGGCACTAAAACTTTGAAAGTACTCCCAGTTAAACTCCcagtaaaatattctaattaaaaaaaaaaaacatcaaaactgcCCTGAGGTTCATAATATGGTAAAAGCTtgattatatacatttaatactACTTTATTCATATGCAGATCAGCCCCAACATTAAAATGGTCAACCATAATATTATaaccttttttgtttcttttttgttttgctttcctTGTAGCTGGTTTTAATATTGTGGGTGACTCTTGCCTTAAACATTACCCTAACAACATTTAGCTAGTCCTAAATGTTGAATTAATCATTTGATTCATTGAAATAGCTTTGCCTTTTTTCAAGTAAATAGCAGGACTGATTATGGATTATTACAGATACTTCAATTTAAGAGTACCATATAGTCATGCAATTGAGGTCCAGTGTGAACTTTCCACCAGTCAGTGATGATTTGgaaagacatgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttagagcacttcatgcttccctttgctgataacttttatagagatgcagatttcattttccagcaggatttggcacactgccaaaagtaccaattagtcttatataatattctaattttctgagacattgatttttggattttcattggctgtaagcttcataatcatcaacgataaaagaaataaacgcttaaactacatcactctgtgtataatacatctgaatgagtttcacattttgaaatgtgaagtactgaaataaagtaacttttcataaTCACAGGATCGTAATCTAATTGTAAGTTGCCTGGAGattctctcccctctctctacttaaatgtagatgttttttacagtttgtatATTAAGAAAATAAGTGGGTCTAACCAATCATGGTAATAAATTTTCAGTGTGTTGGTTCAGTGATGGCTGAGTGGGTGAGCACTCTTTTGTCTCGGCGGGAGTGAGCAGAGATGGAGAGCGAGAGCTGGAGAATTGGATTACCTACCACTGGTCTGGTCTAGAGTTTCATACCATATTTCTAATCAGAAAAGGACAAGACAGGCAACTCACTTGCCCTCGGCAGTCTGAAGGCAAGTGGTGAGGAGTGAGCTACACCAGGAGCACCTGCTCTCCGCAAAGTTTTCATTTTCTTCTAGACGTGGCTGACGTGTGTGTGagtactgttatttattattcaggtttgtgtttttgctttatCTCCATTATTCTGAAGAAACCAGTGTAAAGATGATGAATCTGATCCATTTGTGGACCAGAAAACAAATGGATAGTATGATTTTTGTAGCAGTAGAATTTACTTATAACCTTTTCTTGCTTAAACACTTAAACTAACCCACTGTTAATAATAAAGACTGAAGCAGACTGGCCTGATTGGGGCATTTTGAATTGttgaatttattaatttattacaacAGTACAAAGTGAATCATCGTAAAATAGGAATGTATActatttacaatttaaatacacaataatattcagctgtaaaaaaggaaaatgtttataaagacAGTTTTTAATGTGTTGTTAGACTCTGGACTTGAACTGGCTTTGCTTGGTTTTACATTTTGTACCGTGTTcaacttttttactgttaaacatttaacatcatCTGCTACAGCAGCTTTAAATCTTTCTGTCTAGCTGAACTGTGGCCGGCGCacaaaagcatgaaaaaaatacagccTGGATGGTAACGTAAACCTGAACAGGTGCAGAATGAGGGGCACACATCTGAGAAGAATACAAGCAAACACAAATGTGCTAAATAATACACAAGTTCACtggataaatatattttaaataatgttcttttttttttttcttccacttTCTGATCAACAGATTGACTCTTGTGGTGAAAACGGGATGGGAGGATGCTAGACAAATATACAGATGTGTGTCTTTGTTTGGGTGTGTGGGCGTATGTATATGggtatgtatgtgtttaattGTAAAACTGTACATTTGAATCCTTTTCAATAATTATTTTGGTGAGATTTTGAATATCAGgattattacagtaattaagtGATTATGGCATGCTTCAGCATTCAATAGACACAATcacccacacacaaaaaaaaaaaaacatatatcacatgtatgtataaaaacaaaaaataaggaaaaaggtTGGAAGCTCGTTGGTACAGCAACACAAGAAGAAGAGCTTCTGTTGATAAAAAGTCTTTGTTTTCAAGTATAGTAATAATGATGTAAACAGCGACCTCTAGGGGAGAATTGTGGTACTGCACATTTCTCTGCCTTACAGTTAATACCATAAATctgtcataaaataaataaaat

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009056 catabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00500 Starch and sucrose metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU259155 True 2622 lncRNA 0.35 2 18671463 18675406

Neighbor

gene id symbol gene type direction distance location
LOC103038294 LOC108444096 coding downstream 180015 18488677 ~ 18491448 (-)
LOC103029431 LOC108254710,LOC108444098,LOC103385834 coding downstream 182886 18483415 ~ 18488577 (-)
LOC103038600 LOC108444099 coding downstream 204411 18456589 ~ 18467052 (-)
nckipsd nckipsd coding downstream 220756 18434535 ~ 18450707 (-)
slc25a20 slc25a20 coding downstream 242704 18417224 ~ 18428759 (-)
cacna2d2 cacna2d2,cacna2d2b,LOC107655410 coding upstream 124523 18799929 ~ 18844551 (-)
acy1 acy1,LOC107575257,LOC107655273 coding upstream 174494 18849900 ~ 18861224 (-)
abhd14a abhd14a,LOC107586929,LOC107756017,LOC107704435,LOC107593054 coding upstream 187159 18862565 ~ 18870053 (-)
LOC103032073 NA coding upstream 196845 18872251 ~ 18893531 (-)
LOC103033109 LOC103033109,LOC108443914 coding upstream 228011 18903417 ~ 18920755 (-)
G191025 NA non-coding downstream 166088 18502502 ~ 18505375 (-)
G191003 NA non-coding downstream 293269 18377640 ~ 18378194 (-)
G190997 NA non-coding downstream 304253 18362081 ~ 18367210 (-)
G190990 NA non-coding downstream 310708 18310476 ~ 18360755 (-)
G190988 NA non-coding downstream 423089 18240094 ~ 18248374 (-)
LOC111195398 NA non-coding upstream 27999 18703405 ~ 18721914 (-)
G191095 NA non-coding upstream 48625 18724031 ~ 18726062 (-)
G191077 NA non-coding upstream 53433 18728839 ~ 18729268 (-)
G191079 NA non-coding upstream 57152 18732558 ~ 18752026 (-)
G191074 NA non-coding upstream 73557 18748963 ~ 18778171 (-)
LOC103041510 LOC108414096 other downstream 356126 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 457933 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 495299 18167240 ~ 18176164 (-)
G190788 NA other downstream 1451683 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 1477716 17181114 ~ 17193747 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 32913 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 222103 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 835915 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2423941 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2754610 21430016 ~ 21436453 (-)

Expression


Co-expression Network