LOC111195398


Basic Information

Item Value
gene id LOC111195398
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18703405 ~ 18721914 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU259169
cccATATCTCTTCTTGCCTCTGTATCCAGCCACAACAACTGCATCGTATACTGGGAGCCACTTGTAGGGGTTCACAGTGACGCAGAACAACCCTGAGTAGGTCTGAAGATGTGAACAGAAACATTTCCAGAAGagcagactttcaaaaatggttaggcAACAAACTTTTACAGGATCAAGAATATGgTGTTCCCGAGGCATGCCAAGTCATCTTGCAGAGACATCAAGATCAGATGTGGAGAAGCACTCAGGTTCCACTGGTGTTTCGTTTCAGCATCCCTGCACCCGTAGCATTTTCTAAATATATGAACCACTCTAGCCATTCCACATATAAACAACACTAATACACAATATAACTTTTTACAAATATCCTATTTTCTCGTTTGTACAAGCAACTGTAAACAAAATACCAGTATATGTAAATAATTAGCTCTCATataaagtattttccttgttctgAGAAATATCAATATCAGAACATCCTAGTCACTAAGTTCTATCTTTATTAGAGGATCACATTCTGTTTATGGTGGGTTTAGAAAGCTGAAACTTACATTTTcagatacataaaaaaatgtcagaaatTAAAAAGATATGAGTTGACAGGttgaaaatgaaaacatttccTTTCAGTGGCTGCAgaacatcaaaataaaatatagcctAGGAGTAATACCCAATAGCACACCCCCTCATTCCCGTCCAAAAGAAATGTAATATGTCTTGGCTGCTGGCTGATGTTTGCAAGTCAGTGAACATTTAGAAGCTGTTGAATATGATTAAATGAATGTACATAT
>TU259175
CTTTCCACACAGAGTTTCGACGGTGGCTTTACCACCCTCTTTACTCTTCAGTGTACCCTTCAGGTACATCTCAGCAGGCTCACACACAAAGAAGGCTGTTTTAGCATCAAATGGTTTGCTTTGAGCTTCAATCCTCTCCTTATCTGGCTTGCGGAGGTAGACCGCTGCCGGGCCAAAacactccatctctccatcccccATGGTGGCAGTTTACTGTGAATTCAGGACAACAACCATAATCATCCCCATTTgtgattatatataatattgattacacatctgcacacacacacactaaatggCGCCCAACAGTGGCTGGTGAGCAAATGTGGGTAGTGGACCCAGAGCCCTGTTATTCATAACCCAGTGAtgtaaccac
>XR_002651618.1
TCGTATACTGGGAGCCACTTGTAGGGGTTCACAGTGACGCAGAACAACCCTGAGTAGGTCTGAAGATGTGAACAGAAACATTTCCAGAAGagcagactttcaaaaatggttaggcAACAAACTTTTACAGGATCAAGAATATGgTGTTCCCGAGGCATGCCAAGTCATCTTGCAGAGACATCAAGATCAGATGTGGAGAAGCACTCAGGTTCCACTGGTGTTTCGTTTCAGCATCCCTGCACCCGTAGCATTTTCTAAATATATGAACCACTCTAGCCATTCCACATATAAACAACACTAATACACAATATAACTTTTTACAAATATCCTATTTTCTCGTTTGTACAAGCAACTGTAAACAAAATACCAGTATATGTAAATAATTAGCTCTCATataaagtattttccttgttctgAGAAATATCAATATCAGAACATCCTAGTCACTAAGTTCTATCTTTATTAGAGGATCACATTCTGTTTATGGTGGGTTTAGAAAGCTGAAACTTACATTTTcagatacataaaaaaatgtcagaaatTAAAAAGATATGAGTTGACAGGttgaaaatgaaaacatttccTTTCAGTGGCTGCAgaacatcaaaataaaatatagcctAGGAGTAATACCCAATAGCACACCCCCTCATTCCCGTCCAAAAGAAATGTAATATGTCTTGGCTGCTGGCTGATGTTTGCAAGTCAGTGAACATTTAGAAGCTGTTGAATATGATTAAATGAATGT

Function

GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU259169 True 797 lncRNA 0.37 3 18703405 18706063
TU259175 False 379 lncRNA 0.47 2 18705164 18721914
XR_002651618.1 False 748 lncRNA 0.37 3 18703411 18706020

Neighbor

gene id symbol gene type direction distance location
LOC103038294 LOC108444096 coding downstream 211957 18488677 ~ 18491448 (-)
LOC103029431 LOC108254710,LOC108444098,LOC103385834 coding downstream 214828 18483415 ~ 18488577 (-)
LOC103038600 LOC108444099 coding downstream 236353 18456589 ~ 18467052 (-)
nckipsd nckipsd coding downstream 252698 18434535 ~ 18450707 (-)
slc25a20 slc25a20 coding downstream 274646 18417224 ~ 18428759 (-)
cacna2d2 cacna2d2,cacna2d2b,LOC107655410 coding upstream 78015 18799929 ~ 18844551 (-)
acy1 acy1,LOC107575257,LOC107655273 coding upstream 127986 18849900 ~ 18861224 (-)
abhd14a abhd14a,LOC107586929,LOC107756017,LOC107704435,LOC107593054 coding upstream 140651 18862565 ~ 18870053 (-)
LOC103032073 NA coding upstream 150337 18872251 ~ 18893531 (-)
LOC103033109 LOC103033109,LOC108443914 coding upstream 181503 18903417 ~ 18920755 (-)
G191078 NA non-coding downstream 27999 18671463 ~ 18675406 (-)
G191025 NA non-coding downstream 198030 18502502 ~ 18505375 (-)
G191003 NA non-coding downstream 325211 18377640 ~ 18378194 (-)
G190997 NA non-coding downstream 336195 18362081 ~ 18367210 (-)
G190990 NA non-coding downstream 342650 18310476 ~ 18360755 (-)
G191095 NA non-coding upstream 2117 18724031 ~ 18726062 (-)
G191077 NA non-coding upstream 6925 18728839 ~ 18729268 (-)
G191079 NA non-coding upstream 10644 18732558 ~ 18752026 (-)
G191074 NA non-coding upstream 27049 18748963 ~ 18778171 (-)
G191075 LOC108443907,LOC108271865,LOC108444093,LOC108254800,LOC108443910,LOC108440470 non-coding upstream 53738 18775652 ~ 18788885 (-)
LOC103041510 LOC108414096 other downstream 388068 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 489875 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 527241 18167240 ~ 18176164 (-)
G190788 NA other downstream 1483625 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 1509658 17181114 ~ 17193747 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 175595 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 789407 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2377433 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2708102 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 2789010 21510924 ~ 21544831 (-)

Expression


Co-expression Network