LOC103032794 (tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626)


Basic Information

Item Value
gene id LOC103032794
gene name tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18897509 ~ 18902285 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU259248
CGCTGGCCTGCTGATGGTAGCTGGCTGGTGATCAGGGTGTAAAACAGGACATTTACCGGATAAAGCGGGTTAATGTTCAGCCCGGCCGCGGCGGGTCATACAGCGGCCCGCTCTGAGTGAAGGACGCTGGGTTTAGTTGCTGCCAAACCTTCTGCGTCTTCAAAGCACAGCCATCAGCATTCTGCACATTTGTTCCTACACAGCTGCGAGTGAGCACTGGCCAAGAAAATAATGTCCTGCGGTTGAAGATGGGAGGCAGCGGCTCCAAAGGTAAAGGTTATTGGCCTTTTTCTGGCTCAGGTGGAGGAGATGAATCAACCAAAGAAGGCCAGGAGCAGACCCTGGCCAGGGTCCGGAGCTTCCGAAATGGGACTCCCTTCGTGTTTACCAGGAGGAGCTCCATGTACTTTGATGAGGATGGTGACCTGGCCCACGAATTCTACGAAGAGACGGTGGTGACGAAGAACGGTCGAAAGAAAGCCAAGTTGAAAAGGATCCAGAAGAACCTCATACCTCAGGGAATTATAAAGCTGGATCACCCCTGCCTCCATGTAGATTTTCCAGTCATCATATGTGAGATTTGATGAAGGAGAACACACtcggctcacacacacacgctgcagAGATTCCGTCCCTTCCTTttgctcctcttcctctctgccGGATCCTGGATATTCTCTGTGTGTAGCGCCCCAGGTGGTCGCTCCGGGTCACTGCATGCTTGTGGACTGGCGGGCTGGGAAGCGGTGCCCGCATGGTTTGGGAAAGACAGTGACGATCCTGTTCAATGTCACTGGGGTGTGTTTCACAACCCCAgcctgtgagagtgtgtggactatgatatatatatatagtgcgtgtgtgtgcgcgtgtgtgtctTTTACTGATCATTGATGTGGGGCGATGCAAATGCTTTAGTGCCTCATTCTCTGTGTTCTGTCAGTATGTTCTAGATGTAGGTTATTTAGGTGCAGAATGTATGAATGAATCATTTTCCCTCATTAAGCAGGAAGGATCTAGAATTGAATTTCTTATATCACACCaatgtagaacagtgtaaacaGTTTTAGAATGCAGCTTAGTAGTTCAAACTGTGATACTGTTCTAGAATCTCATAAAACAATTATAATGGTTACATTTGGCTTACAAATGCACAGttctacactcttaaaaaatatacaacaaacattttaaagtttaaagagtctACACATAGTGTAAACTTTTCTAGGAGGAAGCCTTTAATTGTTCGAGATGCTTTTGCATTATGTTATTGTCCTCTAAATCTTATTTGAAGTTATGTTGAAAAGTTATTTGAACTTTGAACATAAGGAACCTTTTGTGACACGTATTTTGTCTTTGTGACGGTTCTTTAAATTTTGGATTCTTCACACTTGcatctcatttatttaaaaaagtagtgCTTTAGGGAACGAACAAAGGCACTCTGCATGAaaaaacagcttattttttcatatttggtattatttttaaaagtgtagaaCTATTCCACAACACTATTAGAGGGACATTTGTTGTTCTAACAAGAGCTGTAAGTTTCCCAACACAGAATAGAGGCCCAGGCTTTAGAACACTTagacatatttatataaataaacgtAATTAATCATGAATTTCTTTTCACTGTGCATGTAGTCAATTTGTGTCAACCcaaagtgtttattttgtatcaGGCAGTAGGAGACAGTGGCTGTGTACAATGCTGTGATTGGATAATCTTTTGTTACAGTAATCATGATGATGCTCTGTTGATCTGGTAGCAGTGCAGAGCCTCACTCACTGTGACCTGCCCTCTGTCCACTGCTGTTGCGTGTTCAATTTCACTGTTAATTTATTGCACATGGTAcgattgggtt
>XM_007234450.3
TtgtagagtgtgaaggtttCCGGTTGCCCGCTGGCCTGCTGATGGTAGCTGGCTGGTGATCAGGGTGTAAAACAGGACATTTACCGGATAAAGCGGGTTAATGTTCAGCCCGGCCGCGGCGGGTCATACAGCGGCCCGCTCTGAGTGAAGGACGCTGGGTTTAGTTGCTGCCAAACCTTCTGCGTCTTCAAAGCACAGCCATCAGCATTCTGCACATTTGTTCCTACACAGCTGCGAGTGAGCACTGGCCAAGAAAATAATGTCCTGCGGTTGAAGATGGGAGGCAGCGGCTCCAAAGGTAAAGGTTATTGGCCTTTTTCTGGCTCAGGTGGAGGAGATGAATCAACCAAAGAAGGCCAGGAGCAGACCCTGGCCAGGGTCCGGAGCTTCCGAAATGGGACTCCCTTCGTGTTTACCAGGAGGAGCTCCATGTACTTTGATGAGGATGGTGACCTGGCCCACGAATTCTACGAAGAGACGGTGGTGACGAAGAACGGTCGAAAGAAAGCCAAGTTGAAAAGGATCCAGAAGAACCTCATACCTCAGGGAATTATAAAGCTGGATCACCCCTGCCTCCATGTAGATTTTCCAGTCATCATATGTGAGATTTGATGAAGGAGAACACACtcggctcacacacacacgctgcagAGATTCCGTCCCTTCCTTttgctcctcttcctctctgccGGATCCTGGATATTCTCTGTGTGTAGCGCCCCAGGTGGTCGCTCCGGGTCACTGCATGCTTGTGGACTGGCGGGCTGGGAAGCGGTGCCCGCATGGTTTGGGAAAGACAGTGACGATCCTGTTCAATGTCACTGGGGTGTGTTTCACAACCCCAgcctgtgagagtgtgtggactatgatatatatatatagtgcgtgtgtgtgcgcgtgtgtgtctTTTACTGATCATTGATGTGGGGCGATGCAAATGCTTTAGTGCCTCATTCTCTGTGTTCTGTCAGTATGTTCTAGATGTAGGTTATTTAGGTGCAGAATGTATGAATGAATCATTTTCCCTCATTAAGCAGGAAGGATCTAGAATTGAATTTCTTATATCACACCaatgtagaacagtgtaaacaGTTTTAGAATGCAGCTTAGTAGTTCAAACTGTGATACTGTTCTAGAATCTCATAAAACAATTATAATGGTTACATTTGGCTTACAAATGCACAGttctacactcttaaaaaatatacaacaaacattttaaagtttaaagagtctACACATAGTGTAAACTTTTCTAGGAGGAAGCCTTTAATTGTTCGAGATGCTTTTGCATTATGTTATTGTCCTCTAAATCTTATTTGAAGTTATGTTGAAAAGTTATTTGAACTTTGAACATAAGGAACCTTTTGTGACACGTATTTTGTCTTTGTGACGGTTCTTTAAATTTTGGATTCTTCACACTTGcatctcatttatttaaaaaagtagtgCTTTAGGGAACGAACAAAGGCACTCTGCATGAaaaaacagcttattttttcatatttggtattatttttaaaagtgtagaaCTATTCCACAACACTATTAGAGGGACATTTGTTGTTCTAACAAGAGCTGTAAGTTTCCCAACACAGAATAGAGGCCCAGGCTTTAGAACACTTagacatatttatataaataaacgtAATTAATCATGAA

Function

symbol description
tusc2b Predicted to be involved in inflammatory response and regulation of mitochondrial membrane potential. Predicted to be active in mitochondrion. Orthologous to human TUSC2 (tumor suppressor 2, mitochondrial calcium regulator).
tusc2 Predicted to be involved in inflammatory response and regulation of mitochondrial membrane potential. Predicted to act upstream of or within several processes, including natural killer cell differentiation; neutrophil-mediated killing of gram-negative bacterium; and regulation of cytokine production. Predicted to be active in mitochondrion.

NR:

description
PREDICTED: tumor suppressor candidate 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259248 True 1877 TUCP 0.43 4 18897509 18902257
XM_007234450.3 False 1662 mRNA 0.43 4 18897752 18902285

Neighbor

gene id symbol gene type direction distance location
LOC103032073 NA coding downstream 3978 18872251 ~ 18893531 (-)
abhd14a abhd14a,LOC107586929,LOC107756017,LOC107704435,LOC107593054 coding downstream 27456 18862565 ~ 18870053 (-)
acy1 acy1,LOC107575257,LOC107655273 coding downstream 36285 18849900 ~ 18861224 (-)
cacna2d2 cacna2d2,cacna2d2b,LOC107655410 coding downstream 52958 18799929 ~ 18844551 (-)
LOC103038294 LOC108444096 coding downstream 406061 18488677 ~ 18491448 (-)
LOC103033109 LOC103033109,LOC108443914 coding upstream 1132 18903417 ~ 18920755 (-)
rad54l2 rad54l2 coding upstream 24742 18927027 ~ 18947393 (-)
LOC103035575 NA coding upstream 297393 19199678 ~ 19203330 (-)
LOC103035880 LOC103035880 coding upstream 303770 19206055 ~ 19213656 (-)
LOC103038073 NA coding upstream 315430 19217715 ~ 19239669 (-)
G191075 LOC108443907,LOC108271865,LOC108444093,LOC108254800,LOC108443910,LOC108440470 non-coding downstream 108624 18775652 ~ 18788885 (-)
G191074 NA non-coding downstream 119338 18748963 ~ 18778171 (-)
G191079 NA non-coding downstream 145483 18732558 ~ 18752026 (-)
G191077 NA non-coding downstream 168241 18728839 ~ 18729268 (-)
G191095 NA non-coding downstream 171447 18724031 ~ 18726062 (-)
G191296 NA non-coding upstream 143121 19045406 ~ 19099824 (-)
G191321 NA non-coding upstream 292642 19194927 ~ 19196386 (-)
G191326 NA non-coding upstream 326449 19228734 ~ 19229174 (-)
G191328 NA non-coding upstream 346919 19249204 ~ 19249453 (-)
G191329 NA non-coding upstream 350591 19252876 ~ 19253089 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 98594 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 582172 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 683979 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 721345 18167240 ~ 18176164 (-)
G190788 NA other downstream 1677729 17217321 ~ 17219780 (-)
LOC103036492 card19,LOC108443695 other upstream 609036 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2197062 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2527731 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 2608639 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 2944684 21846969 ~ 21851642 (-)

Expression


Co-expression Network