G191296


Basic Information

Item Value
gene id G191296
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19045406 ~ 19099824 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU259459
TACTGtttcccatttttctctttattctttttccAGATTGGAAACAAATTGCAGGTCCATTATTTTCATAATCACATTACATGACATGATGCACCAGAATGTACTCTATCTTTGAACAGGAATACACTGAAAAGAACACGAGGTTTCACAATGGATACTGGACTCATACTCGGCCCACTGCTCCTCCGGCAGCACGGCTCGGACTTTTTTAACGTCATTCTTTACAGTGATGCCGTTTGTATTCTTTTATtacacttttcattttatttaaagcccAATTGGAGTTGCGTTTGATCCACATGCCCACTAGAAAATCTTCCTGGACGGAAAGTAACGATGGAAGTCAAGACAACTTTTGCcactttgatatatatatatatatatatatatatatatatttatagattattattttttatatccctttctctctctttttattattttttttacacaatatggAAATTCTACACAGAGCAATAGGATTCGGAATaccgtttttttgttttttgttttttcactgtATTCAACAGTCATTGAGAGCCAGCCACAGATACTATGCTTATTTTCATCaataatcatcataatcatcaataatcaacaataataatcataataatataacaatgaTCATTATCATCCTTTTTATacacaaaagcacaaaaagttgGCAGCAAGGCCGGCGTGAGGATGCACAAGACGGCCGTCGTTTTCACTCATGATATTTAAACGCTGTACAAAATAGTGAAAGTCTGTATTTACAGTGAGGATTCCATCATGTgtcccagtgtgtgtgtgtgtgttggagtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259459 True 815 lncRNA 0.35 2 19045406 19099824

Neighbor

gene id symbol gene type direction distance location
rad54l2 rad54l2 coding downstream 98013 18927027 ~ 18947393 (-)
LOC103033109 LOC103033109,LOC108443914 coding downstream 124651 18903417 ~ 18920755 (-)
LOC103032073 NA coding downstream 151875 18872251 ~ 18893531 (-)
abhd14a abhd14a,LOC107586929,LOC107756017,LOC107704435,LOC107593054 coding downstream 175353 18862565 ~ 18870053 (-)
acy1 acy1,LOC107575257,LOC107655273 coding downstream 184182 18849900 ~ 18861224 (-)
LOC103035575 NA coding upstream 99854 19199678 ~ 19203330 (-)
LOC103035880 LOC103035880 coding upstream 106231 19206055 ~ 19213656 (-)
LOC103038073 NA coding upstream 117891 19217715 ~ 19239669 (-)
LOC103038392 NA coding upstream 158908 19258732 ~ 19280996 (-)
LOC111195448 NA coding upstream 182279 19282103 ~ 19312759 (-)
G191075 LOC108443907,LOC108271865,LOC108444093,LOC108254800,LOC108443910,LOC108440470 non-coding downstream 256521 18775652 ~ 18788885 (-)
G191074 NA non-coding downstream 267235 18748963 ~ 18778171 (-)
G191079 NA non-coding downstream 293380 18732558 ~ 18752026 (-)
G191077 NA non-coding downstream 316138 18728839 ~ 18729268 (-)
G191095 NA non-coding downstream 319344 18724031 ~ 18726062 (-)
G191321 NA non-coding upstream 95103 19194927 ~ 19196386 (-)
G191326 NA non-coding upstream 128910 19228734 ~ 19229174 (-)
G191328 NA non-coding upstream 149380 19249204 ~ 19249453 (-)
G191329 NA non-coding upstream 153052 19252876 ~ 19253089 (-)
G191339 NA non-coding upstream 228142 19327966 ~ 19328622 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 143121 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 246491 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 730069 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 831876 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 869242 18167240 ~ 18176164 (-)
LOC103036492 card19,LOC108443695 other upstream 411497 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 1999523 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2330192 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 2411100 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 2747145 21846969 ~ 21851642 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G435609 NA non-coding CI01000306 null 9745834 ~ 9748829 (+)
rainbow trout (Oncorhynchus mykiss) bsnb LOC106565168 misc NC_048581.1 CM023235.2 48693321 ~ 48814670 (+)