G191339


Basic Information

Item Value
gene id G191339
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19327966 ~ 19328622 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU259587
AAGCTATAAATCTATACTCTACTAATTACTAACCACTGAATCAAGAGTTAGCCACTAATCCACAcgtatacattttatatttttatatttgattaattggatcattttatattttcatatttgatTAATTTCATATTAACAGCAATGACTGTGTGTGTCACTGACATTTCAAATGGCCCAACCGAGAAAGCATGCTTCCTCATTTTACTGGTAAACATCTTAAGGTCACAGAGGTAAGCAGACTAAAGGAGTTCCTCTTTTTCCCTTGGACTCTAAGGAGTTCCTCTTTTTCCCTACGCTCTAGGAACATAGGAGAGCCAGATTAAAAAGTcagtaaaaacatacattttctaGCCTTGCAGTTAAAGATGGCATCTAACAAAATTATACATGCAGCTTCAAGCTATGATAAAATATACTAACTAATTAATCTTACTATAGGTCTAGTAGAACTAATTAATCTGGACTGGTAGAATTGTAGCAAAATTATTATCAATAAAAGAGAATATGAACCAAAGAGGAACTGTGCATTGCTGACCTTAAGACAGGTCGCGAAGGCGAAAGTGATTCTCCTTTGTCACCTTGATAAGGGAACTTAGGCAACCACGTTCTTCTCAGAACCAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259587 True 626 lncRNA 0.35 2 19327966 19328622

Neighbor

gene id symbol gene type direction distance location
LOC111195448 NA coding downstream 15207 19282103 ~ 19312759 (-)
LOC103038392 NA coding downstream 46970 19258732 ~ 19280996 (-)
LOC103038073 NA coding downstream 88297 19217715 ~ 19239669 (-)
LOC103035880 LOC103035880 coding downstream 114310 19206055 ~ 19213656 (-)
LOC103035575 NA coding downstream 124636 19199678 ~ 19203330 (-)
LOC103044861 NA coding upstream 29791 19358413 ~ 19390900 (-)
LOC103044542 NA coding upstream 63171 19391793 ~ 19417508 (-)
LOC103044255 wnk2,LOC108443687,LOC107743253,LOC107694869 coding upstream 95418 19424040 ~ 19486077 (-)
LOC103037097 LOC108443694,LOC107743251,LOC107694868,LOC107578651,LOC107696460 coding upstream 206045 19534667 ~ 19564176 (-)
LOC103035977 tkta,LOC108443693,LOC107578334,LOC107582382,LOC107743250,LOC107694867 coding upstream 247076 19575698 ~ 19604021 (-)
G191329 NA non-coding downstream 74877 19252876 ~ 19253089 (-)
G191328 NA non-coding downstream 78513 19249204 ~ 19249453 (-)
G191326 NA non-coding downstream 98792 19228734 ~ 19229174 (-)
G191321 NA non-coding downstream 131580 19194927 ~ 19196386 (-)
G191296 NA non-coding downstream 228142 19045406 ~ 19099824 (-)
G191337 NA non-coding upstream 89609 19418231 ~ 19428960 (-)
G191338 NA non-coding upstream 204324 19532946 ~ 19562551 (-)
LOC111195401 NA non-coding upstream 281762 19610384 ~ 19618060 (-)
G191357 NA non-coding upstream 291554 19620176 ~ 19620410 (-)
LOC103035771 NA non-coding upstream 292678 19621300 ~ 19623690 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 425681 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 529051 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 1012629 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 1114436 18139363 ~ 18213530 (-)
LOC103036492 card19,LOC108443695 other upstream 182699 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 1770725 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2101394 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 2182302 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 2518347 21846969 ~ 21851642 (-)

Expression


Co-expression Network