LOC111195401


Basic Information

Item Value
gene id LOC111195401
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19610384 ~ 19618060 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU259606
GACAGTGGTGCTACATCTGTTCTTCACTGAGCATCATTATCTCTTTattcctcctctcctctgtaggatagtgtgtgttatttttatttaaaggctTTATATTTGTCAGATAATTGTATGAATATCAATTAGAACAAAGGAAGCTGCAGTTTTAATTCCTATTTTGCTTTGGGATTATAATCTTCATAAACTCTTCAGTAGAAGTTCTCAGGAATTTGATTGGCCACAGCTTTAATCACTTCGTCATCATGAACAGTGAAGGAGGCGGTCCTTATTCAGCAGCCGCCATCACTGAACAACCTGTTACTTCCTATCAAGCCTGTCCACAATGTTGGTGCCCCCCGGAGGCATGTGCACAGTGCTGTGTACACattttgtgTGGGTGTCTGGGTCCTTTCTGACCACATCACATCTCCTGCAGGTTACAGGTAGGTGAATTATCATCTatatcaggggtcggcaattaagtttggccgtgggatacATCGAGAAAAAAACGcacttataaggagatagagagctcaagaacgggcggaaaaatgagaggggaggaatataaacaaaagctcacaagagaaacattttattattactattgccGACCTCTGATCTATACAGATACATTCATTCCAGCAGTTAAATCCATATAtataac
>TU259607
GCTCAGTCAGTACTGAAAGAGAAAGGAGCTGAAGAGAGCGTAAGACTATATATTCATCTGGACACTAAATTTACCTGACTTAAAGGATTATAATCTTCATAAACTCTTCAGTAGAAGTTCTCAGGAATTTGATTGGCCACAGCTTTAATCACTTCGTCATCATGAACAGTGAAGGAGGCGGTCCTTATTCAGCAGCCGCCATCACTGAACAACCTGTTACTTCCTATCAAGCCTGTCCACAATGTTGGTGCCCCCCGGAGGCATGTGCACAGTGCTGTGTACACattttgtgTGGGTGTCTGGGTCCTTTCTGACCACATCACATCTCCTGCAGGTTACAGGTAGGTGAATTATCATCTatatcaggggtcggcaattaagtttggccgtgggatacATCGAGAAAAAAACGcacttataaggagatagagagctcaagaacgggcggaaaaatgagaggggaggaatataaacaaaagctcacaagagaaacattttattattactattgccGACCTCTGATCTATACAGATACATTCATTCCAGCAGTTAAATCCATATAtataac
>XR_002651620.1
CTCTAACAGGAAGCTTTGTTGTGACAGTGGTGCTACATCTGTTCTTCACTGAGCATCATTATCTCTTTattcctcctctcctctgtaggatagtgtgtgttatttttatttaaaggctTTATATTTGTCAGATAATTGTATGAATATCAATTAGAACAAAGGAAGCTGCAGTTTTAATTCCTATTTTGCTTTGGGATTATAATCTTCATAAACTCTTCAGTAGAAGTTCTCAGGAATTTGATTGGCCACAGCTTTAATCACTTCGTCATCATGAACAGTGAAGGAGGCGGTCCTTATTCAGCAGCCGCCATCACTGAACAACCTGTTACTTCCTATCAAGCCTGTCCACAATGTTGGTGCCCCCCGGAGGCATGTGCACAGTGCTGTGTACACattttgtgTGGGTGTCTGGGTCCTTTCTGACCACATCACATCTCCTGCAGGTTACAGGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259606 True 655 lncRNA 0.40 4 19610384 19613834
TU259607 False 568 lncRNA 0.42 4 19610384 19618060
XR_002651620.1 False 454 lncRNA 0.42 3 19610637 19613856

Neighbor

gene id symbol gene type direction distance location
LOC103035977 tkta,LOC108443693,LOC107578334,LOC107582382,LOC107743250,LOC107694867 coding downstream 6363 19575698 ~ 19604021 (-)
LOC103037097 LOC108443694,LOC107743251,LOC107694868,LOC107578651,LOC107696460 coding downstream 46208 19534667 ~ 19564176 (-)
LOC103044255 wnk2,LOC108443687,LOC107743253,LOC107694869 coding downstream 124307 19424040 ~ 19486077 (-)
LOC103044542 NA coding downstream 192876 19391793 ~ 19417508 (-)
LOC103044861 NA coding downstream 219484 19358413 ~ 19390900 (-)
LOC103043652 LOC108440521 coding upstream 167514 19785574 ~ 19792464 (-)
LOC111195449 NA coding upstream 269019 19887079 ~ 19891108 (-)
LOC103042725 LOC103042725 coding upstream 294815 19912875 ~ 19917461 (-)
traip traip coding upstream 625665 20243725 ~ 20253893 (-)
LOC103041184 LOC107715794,LOC107659533,LOC107575741,LOC107685972 coding upstream 884248 20502308 ~ 20622494 (-)
G191338 NA non-coding downstream 47833 19532946 ~ 19562551 (-)
G191337 NA non-coding downstream 181424 19418231 ~ 19428960 (-)
G191339 NA non-coding downstream 281762 19327966 ~ 19328622 (-)
G191329 NA non-coding downstream 357295 19252876 ~ 19253089 (-)
G191328 NA non-coding downstream 360931 19249204 ~ 19249453 (-)
G191357 NA non-coding upstream 2116 19620176 ~ 19620410 (-)
LOC103035771 NA non-coding upstream 3240 19621300 ~ 19623690 (-)
G191402 NA non-coding upstream 129640 19747700 ~ 19757762 (-)
G191418 NA non-coding upstream 162111 19780171 ~ 19784989 (-)
G191419 NA non-coding upstream 168055 19786115 ~ 19786351 (-)
LOC103036492 card19,LOC108443695 other downstream 81804 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 708099 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 811469 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 1295047 18311452 ~ 18315337 (-)
LOC111195395 NA other downstream 1434220 18167240 ~ 18176164 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 1481287 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 1811956 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 1892864 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 2228909 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 2731287 22349347 ~ 22362458 (-)

Expression


Co-expression Network