G72239


Basic Information

Item Value
gene id G72239
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5379266 ~ 5381670 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU82398
AAACACCACAGCGGTGACTGAGTCCTTCAGGCCAATGGTGCAGCCAAAGTGACTGGCCAGGTCACCAATCACAGCAGTCAAAAGACCGATGATCACTATGGAAACAATGAAACACGCCCACCCGTTCCAGTATTCCGTGGGCGGGACGCAGGCAAACAGAACCTTCCAGAACACAGTCAGGAAGTGCATGACATAGTCAAAACAAGATGGCAGACGTTCTTCTCCCCCCTCATCCTCATCCTCATCTCCTGAGATAAAGACAGAACGACAAAAAGAAGGAAAGAGAAAGAAAGGAAAGCAGAATAGAGGGCTCATTATCCTGCTGAAAGAGGCCACAGCCACCAGGGAATACCGTTTCCATGAAAGGATGTACATGGTCTGCAACAATGCTTAGGTAGGTGGTACGTGTCAAAGTAACATCCACATGGATGGCAGGACCCAAGCTTTCCTAGCAAAACATTGCCCAAAGCATCACACTGCCTCCACAGGCTTGCCTTCTTCCCATAGTGCATCCTGGTGCCATGTGTTCCCCAGGTAAGCAATGGACACGCACCCGGACACTCAAATGTGATTCATCAGACCAGGCCACCTTCTTCCATTGCTCCGTGGTCCAGTTCTGATGCTCACGTGCCCACTGTTGGCGCTTTCGGCGGTGGACAAGGGTCAGCATGGGCACCATGACTGGTCTGTGGCTATGCCGCCCCATACGCAATAAACTGCGATGCACTGTGTATTCTGACACCTTTCTATCAGAACCAGCATCAAAGGATTAGTTCACTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU82398 True 781 lncRNA 0.51 2 5379266 5381670

Neighbor

gene id symbol gene type direction distance location
CI01000012_05131253_05139664 CNIH1, MGC85215, CNIH1.S coding downstream 239591 5131030 ~ 5139675 (-)
CI01000012_05118797_05123143 NA coding downstream 256123 5118332 ~ 5123143 (-)
CI01000012_05112839_05116264 NA coding downstream 263002 5111405 ~ 5116264 (-)
CI01000012_05091184_05092014 NA coding downstream 287252 5091021 ~ 5092014 (-)
CI01000012_05079456_05083333 ATP5S coding downstream 295933 5079247 ~ 5083333 (-)
CI01000012_05414096_05416676 TTC9 coding upstream 31699 5413369 ~ 5416780 (-)
CI01000012_05568600_05606181 NA coding upstream 186930 5568600 ~ 5606181 (-)
CI01000012_05609848_05631772 NA coding upstream 227163 5608833 ~ 5631932 (-)
CI01000012_05672517_05674075 NA coding upstream 290559 5672229 ~ 5675834 (-)
CI01000012_05680930_05690904 KCNK1B, KCNK1 coding upstream 298367 5680037 ~ 5690904 (-)
G72234 NA non-coding downstream 55433 5323606 ~ 5323833 (-)
G72232 NA non-coding downstream 59823 5319228 ~ 5319443 (-)
G72229 NA non-coding downstream 65788 5313228 ~ 5313478 (-)
G72208 NA non-coding downstream 145059 5233364 ~ 5234207 (-)
G72073 NA non-coding downstream 198209 5177582 ~ 5181057 (-)
G72292 NA non-coding upstream 68648 5450318 ~ 5451746 (-)
G72300 NA non-coding upstream 92013 5473683 ~ 5474580 (-)
G72323 NA non-coding upstream 133942 5515612 ~ 5518156 (-)
G72332 NA non-coding upstream 143250 5524920 ~ 5525132 (-)
G72333 NA non-coding upstream 143699 5525369 ~ 5525684 (-)
G72204 NA other downstream 77060 5293773 ~ 5302206 (-)
G72068 NA other downstream 599134 4776220 ~ 4780132 (-)
G71898 NA other downstream 844594 4533530 ~ 4534672 (-)
G70774 NA other downstream 2512374 2866508 ~ 2866892 (-)
G69562 NA other downstream 4002968 1332075 ~ 1376298 (-)
G72294 NA other upstream 81170 5462840 ~ 5465857 (-)
G72629 NA other upstream 765341 6147011 ~ 6147494 (-)
CI01000012_07356934_07358497 NA other upstream 1973582 7356863 ~ 7358612 (-)
G74648 NA other upstream 2882659 8264329 ~ 8265654 (-)
G74701 NA other upstream 2985349 8367019 ~ 8367643 (-)

Expression


Co-expression Network