G191518


Basic Information

Item Value
gene id G191518
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 20269621 ~ 20271923 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU259838
ttattttgaatatatGCTGTTAATTTATATATCATACATCATTACATGATCTAGTTTCGGTCAGTAATACATGAGGATTCACTTGGGCTCCTTCTATAATCCAGCTCTGTGATACTGACTGTGTTACGATACGAAAGTCAAGGCTGTAGACAGTCAGAGCCCAAGCGCACAGTGAAATCTCTACAACCCTTCATTGGATggaatgtgtgagtgtggttTAAGCATATTATGATATTAATGTGACAgttccatgaaaaaaaaaatccattttgaACTAATATATCCCTCCTCAAATGTCATTAAGTCATCAACAGCCATGCCAAGATTCATTGTACAACATGGTTTGGTTTTAATGGATCAAGGCAAATGTGTGATAATTTAGAAGAAGAAGTTAAGgagttagcaccatgctaactggtgggttatatttatatgtaactTGTTAGCTAGCTTCATTAGCCTTGTATCTCAAGGAGCAAGTCTCAAGTTTTTGTTGATGATGAAcatttggtgtaaaaaaaaaaaaatgtgtattacaTGATCACTTTATAAaggcattaattaattaactaattccAAACAAAACATTAGCATGAGACATAAATTCATTGGTCCAAGACAAGAGTATGGATCCATTCTGTCAGAAAAAGGAAAGACTAGTCCAACAACTCAaaggaatgtaaaaaaaaaaaagaagaataaaaaaagaaaaagtacagTCCTACCAATAAATCAATGCTTCTCAGATCCTACTTTGTAGAATGTTAAATGCCCCTATAATGAGATTATAATGCTATAAAAGATGCACATAAACTCATTAGTAAAGCAGTAACACTTTGCAATAAGGGTACATCAATTAACAGtacaaaaaacattatgaaCTGACAGTAGGTAAGACATTACTCATAATTACAGCTTTTTTAACTATGCCctaattaattacaattcatTATTCAGGATTAAAATGTTTACTGTTCAATAACTAGCCTTAACTagtctgaaataataattagttgaaatattatatataattcaaACTGTGAATAATCTGTATAATCTCTGCAACACAGTAAAGAAATCCACAGAATGGAACTTGAGAAGCATTGATTAATAGGCAGCACCGTAATTTTGGGatcataaggcgcaccagattataaatcgcattaagcgacactagtaaggatgcctacattgaagtgaaaaatgtttcccttctaatgtgAAAGCACAAaactgtaaacaaaactgtaataaaaaaaattgttttagttCTCCTGAAAAAAtgttatttgggtgagtaaagagcttccgtttatttacagtatagatttccagatttccactaaggctgggtgcagcagcattagcattagcttcagCGAGTAACCGCTTGCCATGATtggcgctacactgaggaaccctgaatgttctggtaacccagggcaatattagctagaaGTTTGTCCcaggtagcttgttttaacacggtaaacgcacaggctacagtccagtatacttgcctctgaatggcaaaagtgCTAGGGTTTAGTgtgattagcggctaattctaatgctgctccagcagtgctagtctagTTTAGCAGCAGATTGCAGCCAATAATACTTGCTTCTGCACAGCGAAAGACCTAGCGCTTAGCttggttagcgactaatgctaatgctgctcaagcagtgctagccagggttagcagctggctacagtctgataacaatgagctctgaatgacaaaagagctggcatttagcgtggttagcggttaatgctaatgctgctcctgcagtTCTAGGTGGGGTCAGCAGCAGGCTGCAGTctgataacactcacctctaaacagcgaaagagttagcgcttagcacggttagcgactaatgctcaAGATATTGTCTGATTTTAGATCTTCTGCAGACATGGAGCTATTAGAGCTAAATTTAATAGTTCTGGAATTCACTATCGAAGACATAAAACTCAAACATAATGATTTAATCCATAATCTTAGTAAAATATCCCTTTCCTGGATAATTTCTCTTCAACCGCAGCTCAGTTAATATagtaggagttttttttttattaatataagaaTTAAGAATGTTGTTTCTGATATGTTACATTAGGTCAAAACAGTGGCAGGTCTAAGACACTTCAAAAGAACTTCAAAAGATCTAACTTAATGCAGCAGTTCACGTTTTCTTGTGACTACCTGTTGGAGCCACAAACAGAATATGCTGAAAATTGTGATTTTGCCTATTAATTTCATGaccatggctttttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259838 True 2303 lncRNA 0.36 1 20269621 20271923

Neighbor

gene id symbol gene type direction distance location
traip traip coding downstream 15728 20243725 ~ 20253893 (-)
LOC103042725 LOC103042725 coding downstream 352160 19912875 ~ 19917461 (-)
LOC111195449 NA coding downstream 378513 19887079 ~ 19891108 (-)
LOC103043652 LOC108440521 coding downstream 477157 19785574 ~ 19792464 (-)
LOC103035977 tkta,LOC108443693,LOC107578334,LOC107582382,LOC107743250,LOC107694867 coding downstream 665600 19575698 ~ 19604021 (-)
LOC103041184 LOC107715794,LOC107659533,LOC107575741,LOC107685972 coding upstream 230385 20502308 ~ 20622494 (-)
LOC103032600 arl8b,LOC103032600,LOC107095653,LOC108435203,LOC105934196,LOC108255114,LOC107385792,LOC103386496 coding upstream 523490 20795413 ~ 20807451 (-)
bhlhe40 bhlhe40 coding upstream 544674 20816597 ~ 20821524 (-)
itpr1 itpr1 coding upstream 565195 20837118 ~ 21072418 (-)
LOC103031955 NA coding upstream 821727 21093650 ~ 21097240 (-)
G191507 NA non-coding downstream 26448 20181887 ~ 20243173 (-)
LOC111195458 NA non-coding downstream 116562 20148618 ~ 20153059 (-)
G191491 gnai2,LOC105909893,LOC103358732,LOC101079922,LOC104930488,LOC103465228,LOC102228806,LOC104958439 non-coding downstream 122998 20069689 ~ 20146623 (-)
G191484 NA non-coding downstream 201350 20010478 ~ 20068271 (-)
LOC111195457 NA non-coding downstream 382937 19880925 ~ 19886684 (-)
G191557 NA non-coding upstream 221387 20493310 ~ 20525681 (-)
G191647 NA non-coding upstream 685066 20956989 ~ 20957556 (-)
G191653 NA non-coding upstream 819897 21091820 ~ 21092235 (-)
G191664 NA non-coding upstream 833517 21105440 ~ 21106822 (-)
G191691 NA non-coding upstream 901549 21173472 ~ 21239522 (-)
LOC103036492 card19,LOC108443695 other downstream 741041 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 1367336 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 1470706 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 1954284 18311452 ~ 18315337 (-)
LOC111195395 NA other downstream 2093457 18167240 ~ 18176164 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 827424 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 1158093 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 1239001 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 1575046 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 2077424 22349347 ~ 22362458 (-)

Expression


Co-expression Network