G191647


Basic Information

Item Value
gene id G191647
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 20956989 ~ 20957556 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU260052
ctcCATGAACTCAACAGCTGCTGTAGTAACCTGCTGTTCAAAGGGCTTTGTTTGCTTaggtataataaaaatatcagtGTCACATTTTTCTGCAGCTTTAATGCTAAATAAGAGACattgaaaacctctggaatgtaatcaagaggaagatggatgaccacaagtcatcaaaccaaactgaactacttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaactgtgattaaaaaccagggttattccatcattttttccccttttttgttattttagctatttctcatttccgcaaataaatgctctaaacgacaatatttttatttggaatttgggagaaatgttgtgcaaagtttataaaataaaacaacaattttactcaaacataagtctataaatagcaaaatcagagaaactgattcagaaactgaagtgctcttttcatttttaccagagctgtatgtactcatattgt

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260052 True 536 lncRNA 0.34 2 20956989 20957556

Neighbor

gene id symbol gene type direction distance location
bhlhe40 bhlhe40 coding downstream 135465 20816597 ~ 20821524 (-)
LOC103032600 arl8b,LOC103032600,LOC107095653,LOC108435203,LOC105934196,LOC108255114,LOC107385792,LOC103386496 coding downstream 149538 20795413 ~ 20807451 (-)
LOC103041184 LOC107715794,LOC107659533,LOC107575741,LOC107685972 coding downstream 334495 20502308 ~ 20622494 (-)
traip traip coding downstream 703096 20243725 ~ 20253893 (-)
LOC103042725 LOC103042725 coding downstream 1039528 19912875 ~ 19917461 (-)
LOC103031955 NA coding upstream 136094 21093650 ~ 21097240 (-)
gpx1 gpx1a,LOC103031640,LOC108435306,LOC108255192,LOC107577558,LOC107718196,LOC103360354 coding upstream 154924 21112480 ~ 21114923 (-)
LOC103026802 NA coding upstream 385146 21342702 ~ 21348384 (-)
LOC103027815 LOC108424594,LOC106566152 coding upstream 455133 21412689 ~ 21428618 (-)
itga7 itga7 coding upstream 484732 21442288 ~ 21498063 (-)
G191557 NA non-coding downstream 431308 20493310 ~ 20525681 (-)
G191518 NA non-coding downstream 685066 20269621 ~ 20271923 (-)
G191507 NA non-coding downstream 713816 20181887 ~ 20243173 (-)
LOC111195458 NA non-coding downstream 803930 20148618 ~ 20153059 (-)
G191491 gnai2,LOC105909893,LOC103358732,LOC101079922,LOC104930488,LOC103465228,LOC102228806,LOC104958439 non-coding downstream 810366 20069689 ~ 20146623 (-)
G191653 NA non-coding upstream 134264 21091820 ~ 21092235 (-)
G191664 NA non-coding upstream 147884 21105440 ~ 21106822 (-)
G191691 NA non-coding upstream 215916 21173472 ~ 21239522 (-)
G191787 NA non-coding upstream 321447 21279003 ~ 21279752 (-)
G191791 NA non-coding upstream 345962 21303518 ~ 21370779 (-)
LOC103036492 card19,LOC108443695 other downstream 1428409 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 2054704 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 2158074 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 2641652 18311452 ~ 18315337 (-)
LOC111195395 NA other downstream 2780825 18167240 ~ 18176164 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 141791 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 472460 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 553368 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 889413 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 1391791 22349347 ~ 22362458 (-)

Expression


Co-expression Network