G191653


Basic Information

Item Value
gene id G191653
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21091820 ~ 21092235 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU260058
agctccactaggtaggattgagattttgtgctcgtgcgctccccctacagttgcagagtgtaataaatgtttcaggcggattagtttctctttctcgttttctggctttcacagacatattcggtctctttccagcttctgccagagtgtctgtatgttagtttgaaGGAATGAACCAGtcgtccttgtagaactgttagaactaaaggtcggaaagcaggtcgcagttctcgcgagcgttggtcgcggccgcctcggaaaacatacagagtctggtttgagctcagaggagctccggcacagacacaagagcaccactattcctcctattacacctcagtgcagcgctgcagtgagtttcaagctgtaattttacttccttaaaaagatcaaaaatcaaggaaatcctacctagt

Function

GO:

id name namespace
GO:0021532 neural tube patterning biological_process
GO:0007275 multicellular organism development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0048856 anatomical structure development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0007389 pattern specification process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
TU260058 True 416 lncRNA 0.47 1 21091820 21092235

Neighbor

gene id symbol gene type direction distance location
itpr1 itpr1 coding downstream 19402 20837118 ~ 21072418 (-)
bhlhe40 bhlhe40 coding downstream 270296 20816597 ~ 20821524 (-)
LOC103032600 arl8b,LOC103032600,LOC107095653,LOC108435203,LOC105934196,LOC108255114,LOC107385792,LOC103386496 coding downstream 284369 20795413 ~ 20807451 (-)
LOC103041184 LOC107715794,LOC107659533,LOC107575741,LOC107685972 coding downstream 469326 20502308 ~ 20622494 (-)
traip traip coding downstream 837927 20243725 ~ 20253893 (-)
LOC103031955 NA coding upstream 1415 21093650 ~ 21097240 (-)
gpx1 gpx1a,LOC103031640,LOC108435306,LOC108255192,LOC107577558,LOC107718196,LOC103360354 coding upstream 20245 21112480 ~ 21114923 (-)
LOC103026802 NA coding upstream 250467 21342702 ~ 21348384 (-)
LOC103027815 LOC108424594,LOC106566152 coding upstream 320454 21412689 ~ 21428618 (-)
itga7 itga7 coding upstream 350053 21442288 ~ 21498063 (-)
G191647 NA non-coding downstream 134264 20956989 ~ 20957556 (-)
G191557 NA non-coding downstream 566139 20493310 ~ 20525681 (-)
G191518 NA non-coding downstream 819897 20269621 ~ 20271923 (-)
G191507 NA non-coding downstream 848647 20181887 ~ 20243173 (-)
LOC111195458 NA non-coding downstream 938761 20148618 ~ 20153059 (-)
G191664 NA non-coding upstream 13205 21105440 ~ 21106822 (-)
G191691 NA non-coding upstream 81237 21173472 ~ 21239522 (-)
G191787 NA non-coding upstream 186768 21279003 ~ 21279752 (-)
G191791 NA non-coding upstream 211283 21303518 ~ 21370779 (-)
G191812 NA non-coding upstream 433924 21526159 ~ 21528036 (-)
LOC103036492 card19,LOC108443695 other downstream 1563240 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 2189535 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 2292905 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 2776483 18311452 ~ 18315337 (-)
LOC111195395 NA other downstream 2915656 18167240 ~ 18176164 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 7112 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 337781 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 418689 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 754734 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 1257112 22349347 ~ 22362458 (-)

Expression


Co-expression Network