brk1 (brk1,BRK1,LOC106565571)


Basic Information

Item Value
gene id brk1
gene name brk1,BRK1,LOC106565571
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21099347 ~ 21103218 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU260072
GGCGCTGCGGAGCCACTAAAACAAACGCAGCGGCTTCAGTAGATCAACATGGCCGGACAGGAGGATCCAGTGCAGAGAGAAATCCACCAGGACTGGGCAAATCGCGAGTATATCGAAGTGATTACCAGCAGCATCAAGAAAATAGCCGATTTCCTCAATTCCTTCGATATGTCGTGCAGGTCCCGCCTAGCCACCCTGAATGAGAAGCTGACTGCCCTGGAGAGGAGGATTGAGTACATTGAAGCCAGAGTTACGAAAGGGGAAACACTGACCTAAATGTCTCGACGCAGAGGACGAGAAAAATGGCCACTCTCcgttttttcctccttttccaTTCAAGTTCAACAACTCAACCAACTGTCACTTGACAGACTGTTTTAGACCAGCCTCTTAAAGCCCAAATTAGGAACTGCTGCAGCAGCACCATCACTGGACTGATTCTGAGTTCTGTTTCTGAAAAAGAGAACGTGGAAAACATGCACATTTTACGTTTTAAGAGGGGCATTCTTTAAAAGTCTCTTGTTTTGAGCAGCTGCTGCAGTTCCTAATTGGGGCTTTAACGTGCGGGACCATTGTGATGACGTCTATgagcattttaaatgtgttccACACTTTCTGCCTCAGtatgaacaatgttgttttattttggatccTTGGTTTGGGTCAGTTGACTTGTTACATACGATTGATTGGTCCCCTTTTTAACTTTGCTCTCAAGCTTGAACAGCTGTTCTAAACATGCAAACTTAGACACTAAACCTTTTAGAAATATTGAGCGTTCAGTAAAGtaatcagtaaataaaacatgGACAGAAGAATAGCCTGGATGCCTTCCAGATCATAACGgttccattttatttttaactgaacaaaaaaaaaaaagataattgtgagaattgtttatttttttgccccTAATGTGTTTAACtagtttctttatatattttgtaattgtttaaaatgcaaaataagCCTGCATATGCAGAAATGTGGCTACCCTTGTCTCTCATGCAATAGAACGAACATCTTAGCAGCTTTACAAAGCACATAATAGCGTGTGTTGGGTGGGGGAGTTTCTAAAGTGCCAATCAGACCATGTTGAAGAGGCGGATGCATCTGCAGCAGTGcggttttgtgttttatttaatgctcATACATTGATGTTTTGTGgtttaaacaaggaaataaaaaaatcaagtaacTGTCA
>XM_007254551.3
CAGGCGGCGCTGCGGAGCCACTAAAACAAACGCAGCGGCTTCAGTAGATCAACATGGCCGGACAGGAGGATCCAGTGCAGAGAGAAATCCACCAGGACTGGGCAAATCGCGAGTATATCGAAGTGATTACCAGCAGCATCAAGAAAATAGCCGATTTCCTCAATTCCTTCGATATGTCGTGCAGGTCCCGCCTAGCCACCCTGAATGAGAAGCTGACTGCCCTGGAGAGGAGGATTGAGTACATTGAAGCCAGAGTTACGAAAGGGGAAACACTGACCTAAATGTCTCGACGCAGAGGACGAGAAAAATGGCCACTCTCcgttttttcctccttttccaTTCAAGTTCAACAACTCAACCAACTGTCACTTGACAGACTGTTTTAGACCAGCCTCTTAAAGCCCAAATTAGGAACTGCTGCAGCAGCACCATCACTGGACTGATTCTGAGTTCTGTTTCTGAAAAAGAGAACGTGGAAAACATGCACATTTTACGTTTTAAGAGGGGCATTCTTTAAAAGTCTCTTGTTTTGAGCAGCTGCTGCAGTTCCTAATTGGGGCTTTAACGTGCGGGACCATTGTGATGACGTCTATgagcattttaaatgtgttccACACTTTCTGCCTCAGtatgaacaatgttgttttattttggatccTTGGTTTGGGTCAGTTGACTTGTTACATACGATTGATTGGTCCCCTTTTTAACTTTGCTCTCAAGCTTGAACAGCTGTTCTAAACATGCAAACTTAGACACTAAACCTTTTAGAAATATTGAGCGTTCAGTAAAGtaatcagtaaataaaacatgGACAGAAGAATAGCCTGGATGCCTTCCAGATCATAACGgttccattttatttttaactgaacaaaaaaaaaaaagataattgtgagaattgtttatttttttgccccTAATGTGTTTAACtagtttctttatatattttgtaattgtttaaaatgcaaaataagCCTGCATATGCAGAAATGTGGCTACCCTTGTCTCTCATGCAATAGAACGAACATCTTAGCAGCTTTACAAAGCACATAATAGCGTGTGTTGGGTGGGGGAGTTTCTAAAGTGCCAATCAGACCATGTTGAAGAGGCGGATGCATCTGCAGCAGTGcggttttgtgttttatttaatgctcATACATTGATGTTTTGTGgtttaaacaaggaaataaaaaaatcaagtaacTGTCA

Function

symbol description
brk1 Predicted to be involved in cell motility and regulation of actin polymerization or depolymerization. Predicted to act upstream of or within actin filament organization. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Orthologous to human BRK1 (BRICK1 subunit of SCAR/WAVE actin nucleating complex).

NR:

description
PREDICTED: protein BRICK1 isoform X1

GO:

id name namespace
GO:0048870 cell motility biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0001701 in utero embryonic development biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05752 C3ORF10, HSPC300; chromosome 3 open reading frame 10

RNA

RNA id representative length rna type GC content exon number start site end site
TU260072 False 1207 lncRNA 0.41 3 21099347 21103213
XM_007254551.3 True 1212 mRNA 0.41 3 21099347 21103218

Neighbor

gene id symbol gene type direction distance location
LOC103031955 NA coding downstream 2107 21093650 ~ 21097240 (-)
itpr1 itpr1 coding downstream 26929 20837118 ~ 21072418 (-)
bhlhe40 bhlhe40 coding downstream 277823 20816597 ~ 20821524 (-)
LOC103032600 arl8b,LOC103032600,LOC107095653,LOC108435203,LOC105934196,LOC108255114,LOC107385792,LOC103386496 coding downstream 291896 20795413 ~ 20807451 (-)
LOC103041184 LOC107715794,LOC107659533,LOC107575741,LOC107685972 coding downstream 476853 20502308 ~ 20622494 (-)
gpx1 gpx1a,LOC103031640,LOC108435306,LOC108255192,LOC107577558,LOC107718196,LOC103360354 coding upstream 9262 21112480 ~ 21114923 (-)
LOC103026802 NA coding upstream 239484 21342702 ~ 21348384 (-)
LOC103027815 LOC108424594,LOC106566152 coding upstream 309471 21412689 ~ 21428618 (-)
itga7 itga7 coding upstream 339070 21442288 ~ 21498063 (-)
LOC111195406 NA coding upstream 404834 21508052 ~ 21508261 (-)
G191653 NA non-coding downstream 7112 21091820 ~ 21092235 (-)
G191647 NA non-coding downstream 141791 20956989 ~ 20957556 (-)
G191557 NA non-coding downstream 573666 20493310 ~ 20525681 (-)
G191518 NA non-coding downstream 827424 20269621 ~ 20271923 (-)
G191507 NA non-coding downstream 856174 20181887 ~ 20243173 (-)
G191664 NA non-coding upstream 2222 21105440 ~ 21106822 (-)
G191691 NA non-coding upstream 70254 21173472 ~ 21239522 (-)
G191787 NA non-coding upstream 175785 21279003 ~ 21279752 (-)
G191791 NA non-coding upstream 200300 21303518 ~ 21370779 (-)
G191812 NA non-coding upstream 422941 21526159 ~ 21528036 (-)
LOC103036492 card19,LOC108443695 other downstream 1570767 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 2197062 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 2300432 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 2784010 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 2885817 18139363 ~ 18213530 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 326798 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 407706 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 743751 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 1246129 22349347 ~ 22362458 (-)
amhr2 NA other upstream 1606331 22709549 ~ 22722905 (-)

Expression


Co-expression Network