G191787


Basic Information

Item Value
gene id G191787
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21279003 ~ 21279752 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU260215
CGGTCCCCGCGCATGAGGGCTCAACGCCCAACCTAGATGCATGTTTTGGCCCTTGGCCCTCACTAACAGCAATGCATGCTTTTCGGGCTCGACGCCCAAGTGTATGAATGTAGAGCCCGTGGCTCGACTGCTCGAGGGCGCACCCCTCGCATaacctcttctctttctttctaacctcattttccTTCTCTCCTCCTTCGCTCCTCTATCCCGTtgtttccctctgacctcctttaggccctattgtataatgttttccttctactatttctgtatttatcttATAACATATTTGTGCTGTATCTTAGTCGCTTCAGACAAAAAGTCGGCTAAACGTAATTTAATGCAAGGTAATATTATGATCGATGAATACAGAATGAACAAATGaacgaaataaataaaagaatgaggtaGGCACGCAGCCTACATATTTGTGGCATTCCCCGCGTATGATCGGATGAATACAATGAATGAACGAAAGACTGAAAGAAGGCATGCTACCGTATGTCTTTTGGGGACGTCCTCTACGCATAAAAGAATAACGAaagatgaaatgaatgaattataagGGCTCACGCCTCGGGGCGCACCCCGCTCGAGCTAGTATCTAGAGTATGGAAGAGGGCTCGCGCCCTTGCGCTTCGGGGGCGCTCCCCGCTCAAGGCTCGCAGCAAGCGCATGTATGAACGAGGGCATCGGCCCATACTAACAGCATGGAAAGTTGGCGCGATCAAGCGCATCACTGGGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260215 True 750 lncRNA 0.48 1 21279003 21279752

Neighbor

gene id symbol gene type direction distance location
gpx1 gpx1a,LOC103031640,LOC108435306,LOC108255192,LOC107577558,LOC107718196,LOC103360354 coding downstream 164080 21112480 ~ 21114923 (-)
LOC103031955 NA coding downstream 181763 21093650 ~ 21097240 (-)
itpr1 itpr1 coding downstream 206585 20837118 ~ 21072418 (-)
bhlhe40 bhlhe40 coding downstream 457479 20816597 ~ 20821524 (-)
LOC103032600 arl8b,LOC103032600,LOC107095653,LOC108435203,LOC105934196,LOC108255114,LOC107385792,LOC103386496 coding downstream 471552 20795413 ~ 20807451 (-)
LOC103026802 NA coding upstream 62950 21342702 ~ 21348384 (-)
LOC103027815 LOC108424594,LOC106566152 coding upstream 132937 21412689 ~ 21428618 (-)
itga7 itga7 coding upstream 162536 21442288 ~ 21498063 (-)
LOC111195406 NA coding upstream 228300 21508052 ~ 21508261 (-)
arfgap1 arfgap1 coding upstream 271003 21550755 ~ 21570651 (-)
G191691 NA non-coding downstream 39481 21173472 ~ 21239522 (-)
G191664 NA non-coding downstream 172181 21105440 ~ 21106822 (-)
G191653 NA non-coding downstream 186768 21091820 ~ 21092235 (-)
G191647 NA non-coding downstream 321447 20956989 ~ 20957556 (-)
G191557 NA non-coding downstream 753322 20493310 ~ 20525681 (-)
G191791 NA non-coding upstream 23766 21303518 ~ 21370779 (-)
G191812 NA non-coding upstream 246407 21526159 ~ 21528036 (-)
G191827 NA non-coding upstream 430164 21709916 ~ 21711285 (-)
G191858 NA non-coding upstream 553390 21833142 ~ 21833495 (-)
G191870 NA non-coding upstream 580374 21860126 ~ 21924848 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 175785 21099347 ~ 21103218 (-)
LOC103036492 card19,LOC108443695 other downstream 1750423 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 2376718 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 2480088 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 2963666 18311452 ~ 18315337 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 150264 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 231172 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 567217 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 1069595 22349347 ~ 22362458 (-)
amhr2 NA other upstream 1429797 22709549 ~ 22722905 (-)

Expression


Co-expression Network