npff (npffl,npff,LOC107738884,LOC107677943,LOC107669931)


Basic Information

Item Value
gene id npff
gene name npffl,npff,LOC107738884,LOC107677943,LOC107669931
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21430016 ~ 21436453 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU260257
gggatgtgctggaggaggctttgtgcagcggtcagactccaCCACCATCAATGATCTTGCTTCCTTCCTGTGATGTCGAGGGTTCTGGGCAGCAGgagtataaatataacattcTGTACCATctcactcagaacacacactcacactctcctATACTGAGTATtgattattagtttatttttatcattattattattgatcagCTGTAGGATCCTGAGGATGGAGGCTGGAGTGTGGTTCACGATGTTCGGGGTTCTGCTGGCCGTGACTGGGACGGGTCACTGCGTTCAGGAGGGAGAGGTTCTGGAGCCGAGCGGCCGGCTGACCATGGATTCAGAGGAGATCCTTCCAGAGAACCTGGTCAGTGAGGAGGAATTGGTCGTATTCTGGAGGACCGTCTGCTGACCTCAGTACTGCGCTCTCTTCTCCACGGATCTCAGAGACACACCCGCAACCCTTCAGTCCTGCATCAGCCTCAGcgATTTGGTCGGGGTACTCGAGGGGACCTGCCCGCAGAGGAGAGGATACAGTCACGAGACTGGGAGACCGTCCCGGGGCAGATCTGGAGCATGGCAGTCCCTCAGAGATTCGGCAAAAAGTAGAACAGGATCAGACCAGACCAAGCATTACAGACCATCACCACACCTCCATACATCatacctcacctcacctcacaccACCTGCTGCTCTCTGTTAGATTCACCTGTTTGAGTGttaatatataatctatatcaataaaataaacatataatatagaACCATGTGCCATAAATAAGTCAGCTATTCATTAGTTATCAATTAGTTATCAATTAGTTATCATAGAAAATGTACAGGAATCAGAAAGTGGaataaaaatgagttttaaaaagg
>XM_022682851.1
ATGGAGGCTGGAGTGTGGTTCACGATGTTCGGGGTTCTGCTGGCCGTGACTGGGACGGGTCACTGCGTTCAGGAGGGAGAGGTTCTGGAGCCGAGCGGCCGGCTGACCATGGATTCAGAGGAGATCCTTCCAGAGAACCTGGTAAGATCTGCAGTAAGAACTGACCctgGAGGAATTGGTCGTATTCTGGAGGACCGTCTGCTGACCTCAGTACTGCGCTCTCTTCTCCACGGATCTCAGAGACACACCCGCAACCCTTCAGTCCTGCATCAGCCTCAGcgATTTGGTCGGGGTACTCGAGGGGACCTGCCCGCAGAGGAGAGGATACAGTCACGAGACTGGGAGACCGTCCCGGGGCAGATCTGGAGCATGGCAGTCCCTCAGAGATTCGGCAAAAAGTAGAACAGGATCAGACCAGACCAAGCATTACAGACCATCACCACACCTCCATACATCatacctcacctcacctcacaccACCTGCTGCTCTCTGTTAGATTCACCTGTTTGAGTGttaatatataatctatatcaataaaataaacatataatatagaACCATGTGCCATAAATAAGTCAGCTATTCATTAGTTATCAATTAGTTATCAATTAGTTATCATAGAAAATGTACAGGAATCAGAAAGTGGaataaaaatgagttttaaaaaggaaaa

Function

symbol description
npffl Predicted to enable neuropeptide hormone activity. Predicted to act upstream of or within neuropeptide signaling pathway. Orthologous to human NPFF (neuropeptide FF-amide peptide precursor).
npff Predicted to enable G protein-coupled receptor binding activity and neuropeptide hormone activity. Predicted to be involved in excitatory postsynaptic potential. Predicted to be located in extracellular region. Predicted to be active in several cellular components, including axon terminus; dendrite; and perikaryon.

NR:

description
PREDICTED: pro-FMRFamide-related neuropeptide FF

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005184 neuropeptide hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260257 True 870 lncRNA 0.47 4 21430020 21436453
XM_022682851.1 False 674 mRNA 0.48 3 21430016 21433834

Neighbor

gene id symbol gene type direction distance location
LOC103027815 LOC108424594,LOC106566152 coding downstream 1398 21412689 ~ 21428618 (-)
LOC103026802 NA coding downstream 81632 21342702 ~ 21348384 (-)
gpx1 gpx1a,LOC103031640,LOC108435306,LOC108255192,LOC107577558,LOC107718196,LOC103360354 coding downstream 315093 21112480 ~ 21114923 (-)
LOC103031955 NA coding downstream 332776 21093650 ~ 21097240 (-)
itpr1 itpr1 coding downstream 357598 20837118 ~ 21072418 (-)
itga7 itga7 coding upstream 5835 21442288 ~ 21498063 (-)
LOC111195406 NA coding upstream 71599 21508052 ~ 21508261 (-)
arfgap1 arfgap1 coding upstream 114302 21550755 ~ 21570651 (-)
LOC111195407 NA coding upstream 135914 21572367 ~ 21583063 (-)
LOC103033505 agap2 coding upstream 161674 21598127 ~ 21630334 (-)
G191791 NA non-coding downstream 59237 21303518 ~ 21370779 (-)
G191787 NA non-coding downstream 150264 21279003 ~ 21279752 (-)
G191691 NA non-coding downstream 190494 21173472 ~ 21239522 (-)
G191664 NA non-coding downstream 323194 21105440 ~ 21106822 (-)
G191653 NA non-coding downstream 337781 21091820 ~ 21092235 (-)
G191812 NA non-coding upstream 89706 21526159 ~ 21528036 (-)
G191827 NA non-coding upstream 273463 21709916 ~ 21711285 (-)
G191858 NA non-coding upstream 396689 21833142 ~ 21833495 (-)
G191870 NA non-coding upstream 423673 21860126 ~ 21924848 (-)
G191880 NA non-coding upstream 521388 21957841 ~ 21958432 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 326798 21099347 ~ 21103218 (-)
LOC103036492 card19,LOC108443695 other downstream 1901436 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 2527731 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 2631101 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 3114679 18311452 ~ 18315337 (-)
elmo2 elmo2,LOC106583331 other upstream 74471 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 410516 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 912894 22349347 ~ 22362458 (-)
amhr2 NA other upstream 1273096 22709549 ~ 22722905 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other upstream 1349710 22786163 ~ 22803642 (-)

Expression


Co-expression Network