G191827


Basic Information

Item Value
gene id G191827
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21709916 ~ 21711285 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU260302
aaataaaatcatgaaaatacagtacagcaaaataaatttaaatagtaAAACAGTCCTGCAGTTGTGAATGACTGTACTAGTTGTTTTTGAACCAAGTTCAAAATCAGTTTACTGTagggaaatgtttataaagacTACACAACTACTAAACAACCCTACATAAACATCCATAAATGCTTAATCCTCTTCAACACACAAAAAGAacctaaattattatttttggtccaaaataaaaactaattgtTGGAAACAAAAAtagtgcatctccaaaaattaaatatcattctCTTTAAACCATTgctttccaaaccatcactgatcatcagtaaactttgcatttaatttgtaaatcaagggagcagagtctgtaGGAAGAGAGGAGAGTCAAGTAGggccaaactgcttgaggtctattgtgaagtttccacaatcagtgatggttccctctgctgataacttttatggagatgaggatttcgtTTCACAAAAGTGCCAAAtggtcttatatataatattataatgttctgatttttgggttttaattggctgtaataattattaattaacaataaaatcactgtgtgtgtaatacatctatatgagttttatattttgaaatgaaatactgaaataaagtaactttcctatgatattcttatttttccagatgTACTAGTGTATATACTTGAAAACCCCAAACCAAACTTTTTGCAGGTTTTGAATGTTTTGATTTGGATGCTTTTTCACCATTTAATTgataaactatataaataaaaatatttcgttttcttacttaaaaaaagcaattactaAACTGCGATTTAAAAATAGCTATGCTCCTTTTATCCTACATGTGTTTAAGTGTAGCCTTGCGACTGTTTATTATAAGCTGTATTATTATGCAAGTATTGTGTCGTTCTAgtattttttctcctctttttagtttttttttcttttgatttattttaccattttatattgtaattagtGTCAATtcaaatactactaataataaaaaaaatatatatagaaatgttTATGTAGGTTTAAGTCAGTCATCATGAAGCTGATGAAGGTAATGTAGGTGTTATGTAATCTTATGAACAGTTCCCCACAGTTAACAGTGGTGCCCAGTGGAGTCCTGTCCTCATTAGGCTGAACCCGCCCTCAGCTCCGCCCCCTGATGCCCACCATCCTGCTCAGTGTCCCGTCTCAGCAGGAATCTTCCACTCTGCGAAAAACTGCCAGGAAGTTCTGCCCTCTGTTCCTCTGcaccttcttcccctcctccgTACACGTTCCCAGACGAGTGATGATGACGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260302 True 1324 lncRNA 0.33 3 21709916 21711285

Neighbor

gene id symbol gene type direction distance location
cdk4 cdk4,LOC107747701,LOC106565448,LOC107701179,LOC107567936 coding downstream 46317 21647105 ~ 21663599 (-)
LOC103033505 agap2 coding downstream 79582 21598127 ~ 21630334 (-)
LOC111195407 NA coding downstream 126853 21572367 ~ 21583063 (-)
arfgap1 arfgap1 coding downstream 139265 21550755 ~ 21570651 (-)
LOC111195406 NA coding downstream 201655 21508052 ~ 21508261 (-)
LOC103023479 tnnc1,LOC103023479,LOC108424583,LOC106571909,LOC103385538 coding upstream 294149 22005434 ~ 22012959 (-)
tmbim6 tmbim6,LOC106583271 coding upstream 479539 22190824 ~ 22205696 (-)
avil avil coding upstream 495837 22207122 ~ 22229088 (-)
ctdsp2 ctdsp2,LOC106583267,LOC106565429 coding upstream 526162 22237447 ~ 22247617 (-)
LOC103037062 LOC108424641,LOC106583265,LOC103359365,LOC100304514 coding upstream 548374 22259659 ~ 22284657 (-)
G191812 NA non-coding downstream 181880 21526159 ~ 21528036 (-)
G191791 NA non-coding downstream 339137 21303518 ~ 21370779 (-)
G191787 NA non-coding downstream 430164 21279003 ~ 21279752 (-)
G191691 NA non-coding downstream 470394 21173472 ~ 21239522 (-)
G191664 NA non-coding downstream 603094 21105440 ~ 21106822 (-)
G191858 NA non-coding upstream 121857 21833142 ~ 21833495 (-)
G191870 NA non-coding upstream 148841 21860126 ~ 21924848 (-)
G191880 NA non-coding upstream 246556 21957841 ~ 21958432 (-)
G191884 NA non-coding upstream 255224 21966509 ~ 21966712 (-)
G191898 NA non-coding upstream 287887 21999172 ~ 22002180 (-)
elmo2 elmo2,LOC106583331 other downstream 165085 21510924 ~ 21544831 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other downstream 273463 21430016 ~ 21436453 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 606698 21099347 ~ 21103218 (-)
LOC103036492 card19,LOC108443695 other downstream 2181336 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 2807631 18897509 ~ 18902285 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 135684 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 638062 22349347 ~ 22362458 (-)
amhr2 NA other upstream 998264 22709549 ~ 22722905 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other upstream 1074878 22786163 ~ 22803642 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 1343348 23054633 ~ 23058805 (-)

Expression


Co-expression Network