G192005


Basic Information

Item Value
gene id G192005
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22257915 ~ 22258796 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU260524
GGAGACCGGCGTCACGGCCGAGCGTAGGGAGTTATTCGCGCTGCCGCTGGGAGACCGGCGTCGCGGACGCGGGGGTTATTCGCGCTGCCGAGGGAAGACTGGCGTCTGACGCTAagcgaagtttaagggttaacaaGGGTTAACTTTAAGGGTTAacaaaaaacggctcacatggcattcgtGCATACTAGACACCACAAcgagacattttaaaatgaatgaaaaaacgatggaatgagacctttaagacgGCCAATTTACACCACAACTCAAGATCAAATCTGCATAGGTCACTCAAatctaacacaaaaaaatacgaAATACCATCTTGTCAACCATGCAACATCTGCTAACAATGAAACACATTCTCACCGATTGTCCAGCCTATAACCGTATAAGGCAATCTACTACAAAGAAGATAACATATATAGCAAGATATATTTCCCTTATCGTGCTACAACCTTAGAACAACCAAGTGTATGCCACAAATAGGCAAATATGTGCTGAagtggcaataaaaccccaacaaccaaccaaccaccaagatcttgcattgatgttggtagagtctgaccgctgcacaaagtcttctccagcacatcccaaagattctcaatgagttTAAGGTCTGGACtatgtggtgaactctctcaatccatgtgtgaaaatgatgatctcatgctccctgaatcactctttctcaattccagccccatgaatcctgacattgtcatcttggaatatggccgtgccatcagggaagaaaaaaatctattgatggaataacatggactatatttaatatactcacttagtcagctgacctcattctttcagcacatactgttgctgaacctagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260524 True 861 lncRNA 0.43 2 22257915 22258796

Neighbor

gene id symbol gene type direction distance location
ctdsp2 ctdsp2,LOC106583267,LOC106565429 coding downstream 10298 22237447 ~ 22247617 (-)
avil avil coding downstream 28827 22207122 ~ 22229088 (-)
tmbim6 tmbim6,LOC106583271 coding downstream 52219 22190824 ~ 22205696 (-)
LOC103023479 tnnc1,LOC103023479,LOC108424583,LOC106571909,LOC103385538 coding downstream 244956 22005434 ~ 22012959 (-)
cdk4 cdk4,LOC107747701,LOC106565448,LOC107701179,LOC107567936 coding downstream 594316 21647105 ~ 21663599 (-)
LOC103037062 LOC108424641,LOC106583265,LOC103359365,LOC100304514 coding upstream 863 22259659 ~ 22284657 (-)
LOC111195450 NA coding upstream 27813 22286609 ~ 22293538 (-)
eef1akmt3 NA coding upstream 39056 22297852 ~ 22303090 (-)
LOC103024753 LOC108424569 coding upstream 201662 22460458 ~ 22639548 (-)
LOC103040317 faim2 coding upstream 434280 22693076 ~ 22705489 (-)
G191898 NA non-coding downstream 255735 21999172 ~ 22002180 (-)
G191884 NA non-coding downstream 291203 21966509 ~ 21966712 (-)
G191880 NA non-coding downstream 299483 21957841 ~ 21958432 (-)
G191870 NA non-coding downstream 333067 21860126 ~ 21924848 (-)
G191858 NA non-coding downstream 424420 21833142 ~ 21833495 (-)
G192009 NA non-coding upstream 48811 22307607 ~ 22309156 (-)
G192012 NA non-coding upstream 83596 22342392 ~ 22342630 (-)
G192014 NA non-coding upstream 107212 22366008 ~ 22366333 (-)
G192120 NA non-coding upstream 148450 22407246 ~ 22441456 (-)
G192137 NA non-coding upstream 273658 22532454 ~ 22532716 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 406273 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 713084 21510924 ~ 21544831 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other downstream 821462 21430016 ~ 21436453 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 1154697 21099347 ~ 21103218 (-)
LOC103036492 card19,LOC108443695 other downstream 2729335 19511321 ~ 19528580 (-)
alas1 alas1,LOC106583798 other upstream 90551 22349347 ~ 22362458 (-)
amhr2 NA other upstream 450753 22709549 ~ 22722905 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other upstream 527367 22786163 ~ 22803642 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 795837 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 1780450 24039246 ~ 24105898 (-)

Expression


Co-expression Network