G72323


Basic Information

Item Value
gene id G72323
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5515612 ~ 5518156 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU82495
CTGGTGTCGCGCGTGCCAGAGCCAGTCATGTTTCCGCTGTCATATATGCGATGCTAAAGGCTATTTATGTTAACCATTGCGATAATAAATACACACGTTTATGGAAAATACCAGGGACTGCTTGAGGAACGTAGACATTTCTTATATGATTATAATCGTGTATTTATTTGGTTTAATGTTTTCTGTCTCTTCCCTGTGCCTTTGTTGATACCGCGGATGCATACGCATCTTTCAGATTCACACACTCCGGTTAACTCCTGTTTTCCTCTCATGAGCTCCATCTGTTGCTCTGGCTGAAAGGATCAGGATAGACAGGAGAGATCGCTCAAACGTCCTCTGATCGCAATCATCACATAATTTAGAGGAAAATTAATAGAAATGCTCAGATAGTGACGTAAACATAGGGTATGTTATCAATATATTTCTAAATGTGTAAGCCTTTGGACTTAAAAACCGTAATAGAGTTGTTTTGTGCACTCTTGTGATCGTAAATGAATGGAAGCAGGTGCAACTGAATAGCTTGTTTACTTCGAACCGGAAGACGCTCCCACTTTTGACGCAAGGCCTCATGGGGCGTAGGAAACTTGTGGATACATGTTTTATTATTATCAGCTGTGGAATCCAACCATTACACATCTGAGGTAACGTAGTTAGCCTAGGCTACTTTATTGAGTATTTCCATTTTATGCAACTTTACATATTTACTATTAATAGTAAATTAATAATTAATAAAGTTAAGATCATCATGTTTGTAGCGTGATCCAGGGGATTAAAGTGGAGTAAATTATTCCTGGATTAAGCTACAAACATGATCTTATAGAACATGATGCATTGCTGTGTCTGTTATCCCATAATTCCCACTTTTGAACACAGTTAGTCTTGCTTTAACGGACATTAATATAAGACAACACTGCAAAAACAGTTTACTGTCAAGCTGTTATATATTTATTGTCCTATATTCCCAATTTTTCTCATGCATGTCCTTAATTTAATTTCATATGTTGGTATTAATTCAGTGTTTATAATACTAATACTTGAACTTAAAAGAATTTAACCCAAACTGACTGGTTTTCTAGAGATCAAAGGTTTTGTGAAAAAAGTGGAAGACTTAAACACAAAGTCTGTAAAATAAACTTAAAAGGATTTGATGATCACTAGCGATAGTATTTTATTCTGTGTTGTCATCATTTAGGTTGGATTTCAGCTTTAATGTAGATTTTTTTTTTTTTAATACAAAACAGCTGATATAGAGTACCTCAGAGTGTTTTTGTAGGCCAACCCCCAAGGGTGTGCTGGGTTGTAGGCTATAAACGGACTACAGCACACCAACGTCACCACCACCAAGCTTCCTCAAACTTTATTTAGAAAACAACTTTATTTAAAAACATGCTCGCTGATTATGATCTGTGCTGTGTATGAATACTTATCCACTTTTTCATGAGAAATGCTGTCCAAATGTCCTGTTTGTCATGATGACGTGATGAAGTCCCTGCCAAAGGAAGTAGTCCCTTTTAGCAACTTGTTAGCAACTGCCATTTTAAGACACAATAAAGGTTTAAAAAAATCACAAGTGGGTTATAACTGGTGTGTTTTATGTCATAGATCAAAACGTGAAAATATTTAGAGGCTTTGTTAACCACAGATCTTATTTCAGGTGATTTAGCAAAAACCCATTCAAAAAACCCATAGACTTTAGGGCGATGGAACCGGAAGTCCTAAAATGCTAACTCGTTTCCAGGTTTTACCTACAAAAACAGGTCATCCCTGAGGTATTCTATTGCCATAGAAACTAGTGGACTATAAGAAACGTGCAGGCTATGTATAGGCCTTATGTGTATATGTAAATGATGCTTTGCCTTTATTATCATTTCATTATATGTAACTGTTACGACCTGCGTTCTTGTATTTGGTATGTGTTTGTTTTCTTTTCCCTTTTGTTTTGTCAGTGTTCTAATAGGTTGTCCAATGATGATTTCCACTCTCTCTATTGGCGGTTCAGAAGAGGCGTGGTCTTTATAAGGGCGCTGCCGGCGTTCAACATGGAGCTCATTCTTGGTTTGGCCGCGTTTGGATTGGGAGCTCCTGGATCCCTCCTCCGGCCGATGATCAAACTTGCTACCTTCTAGTGAAAGTGTGCCTTTTGTACAGCCTGTTCATCATGTTCAACTATTCCTAAAGTCATCTCTCAAGAACGTGGAGTGTAGGGGTGTCCTGCCTATTTATTTTGATAACTTGGTTTGTACTTTGTTTTTCGTTAGGGAGTTAGGGAAGGTAAATGTATTTTATTTTTATGTTCACTTAGGTTATTTAATC

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 58

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU82495 True 2313 lncRNA 0.37 3 5515612 5518156

Neighbor

gene id symbol gene type direction distance location
CI01000012_05414096_05416676 TTC9 coding downstream 98936 5413369 ~ 5416780 (-)
CI01000012_05131253_05139664 CNIH1, MGC85215, CNIH1.S coding downstream 375937 5131030 ~ 5139675 (-)
CI01000012_05118797_05123143 NA coding downstream 392469 5118332 ~ 5123143 (-)
CI01000012_05112839_05116264 NA coding downstream 399348 5111405 ~ 5116264 (-)
CI01000012_05091184_05092014 NA coding downstream 423598 5091021 ~ 5092014 (-)
CI01000012_05568600_05606181 NA coding upstream 50444 5568600 ~ 5606181 (-)
CI01000012_05609848_05631772 NA coding upstream 90677 5608833 ~ 5631932 (-)
CI01000012_05672517_05674075 NA coding upstream 154073 5672229 ~ 5675834 (-)
CI01000012_05680930_05690904 KCNK1B, KCNK1 coding upstream 161881 5680037 ~ 5690904 (-)
CI01000012_05738968_05745791 AGPAT4 coding upstream 220687 5738843 ~ 5745791 (-)
G72300 NA non-coding downstream 41032 5473683 ~ 5474580 (-)
G72292 NA non-coding downstream 63866 5450318 ~ 5451746 (-)
G72239 NA non-coding downstream 133942 5379266 ~ 5381670 (-)
G72234 NA non-coding downstream 191779 5323606 ~ 5323833 (-)
G72232 NA non-coding downstream 196169 5319228 ~ 5319443 (-)
G72332 NA non-coding upstream 6764 5524920 ~ 5525132 (-)
G72333 NA non-coding upstream 7213 5525369 ~ 5525684 (-)
G72334 NA non-coding upstream 7637 5525793 ~ 5526023 (-)
G72335 NA non-coding upstream 12285 5530441 ~ 5530895 (-)
G72328 NA non-coding upstream 21796 5539952 ~ 5566228 (-)
G72294 NA other downstream 49755 5462840 ~ 5465857 (-)
G72204 NA other downstream 213406 5293773 ~ 5302206 (-)
G72068 NA other downstream 735480 4776220 ~ 4780132 (-)
G71898 NA other downstream 980940 4533530 ~ 4534672 (-)
G72629 NA other upstream 628855 6147011 ~ 6147494 (-)
CI01000012_07356934_07358497 NA other upstream 1837096 7356863 ~ 7358612 (-)
G74648 NA other upstream 2746173 8264329 ~ 8265654 (-)
G74701 NA other upstream 2848863 8367019 ~ 8367643 (-)
CI01000012_09068458_09070536 NA other upstream 3549750 9067906 ~ 9070765 (-)

Expression


Co-expression Network