LOC103041653 (phf20,LOC107655063,LOC107727854,LOC107561906)


Basic Information

Item Value
gene id LOC103041653
gene name phf20,LOC107655063,LOC107727854,LOC107561906
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22786163 ~ 22803642 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU260751
GAGAGATTTGAGGTTGAATTTCATGTCCAATGTGCTGGTATAGACTGGTGCTGTGATATGAACTGTATCCGTGTTtaaattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggagaagGTTTTGGACGATTGTCCGAGTGTAGTACTGGCTGGCAACAGGGATGAGCTGACTGGCGGGACCCAGCAGCAGCAATGGCAGATTAACCTGCTGGAGCACATCGAGTCTGTGCAGGAGGAGATCACCCACAGGATGGACTTCATCGAGAAGGAGCTAGATGTGTTGGAGAGCTGGCTGGACTGTACGGGTGAACTGGAGCCTCCAGAACCGCTGGACCGCCTGCCTGAGCTCAAGCACAGTATAAAACAGCTGATGGGTGAACTGGTGAAGATCCAGCAGATCGCCCTGGCGTGCACTACCTGAAGTTTGCAGAACTCCAAAAGGACATCAGCACTGGTCAGGATAGAGACAAGAGGGGGCATAGCAGGGCAAGCAAATGACTGGACTTATTATGGGATGCAGAAACAGGGGAATTCaaaacttgaattttttttttgttgcacttTTTCACTTAAAAAGAGAATCTTCCTCCTAAGAATTTCATGTGAACAACAGGTCACAAAttatatatctgtaata
>TU260753
GAGAGATTTGAGgagaagGTTTTGGACGATTGTCCGAGTGTAGTACTGGCTGGCAACAGGGATGAGCTGACTGGCGGGACCCAGCAGCAGCAATGGCAGATTAACCTGCTGGAGCACATCGAGTCTGTGCAGGAGGAGATCACCCACAGGATGGACTTCATCGAGAAGGAGCTAGATGTGTTGGAGAGCTGGCTGGACTGTACGGGTGAACTGGAGCCTCCAGAACCGCTGGACCGCCTGCCTGAGCTCAAGCACAGTATAAAACAGCTGATGGGTGAACTGGTGAAGATCCAGCAGATCGCCCTGGCGTGCACTACCTGAAGTTTGCAGAACTCCAAAAGGACATCAGCACTGGTCAGGATAGAGACAAGAGGGGGCATAGCAGGGCAAGCAAATGACTGGACTTATTATGGGATGCAGAAACAGGGGAATTCaaaacttgaattttttttttgttgcacttTTTCACTTAAAAAGAGAATCTTCCTCCTAAGAATTTCATGTGAACAACAGGTCACAAAttatatatctgtaata
>XM_022682651.1
tTATACCCCTTGTACTCCATTGAGAATTCGAGGGCTTGGCggtggcgcatgcgcagtcagACTCAGGTCATCCCGGTAGGCTCGTGTCGTTCGTGTTGAACAGCCGGGAAAACAAACGGGCAGCGCGCGCCTCTGCTCACCGGGAGACAATAAAGGAATTCCGAGCGTTTTACCGGAAATATCTGCTCCTGAAGCGCGAGATACAGGAACACGGGAATACGCCGTCAGCCGGATGAGTAGGACGCCACCCGCCAAGCGCGGGATTCGGTTTGAGGTCGGGGCGTCTGTGGAGGCGAGGGACAGTCTCAAAAACTGGTACGCTGCCAACATTGAAAAAATCGACTATGAGGACGAGAAGGTTCTGATACACTACCGTCAGTGGAGTCACCGCTATGACGAGTGGTTCGACTGGACCAGTCCGTACCTCAGACCTGTGGAGAGGGTCCAGCTGAGAAGGCAGGGGCTGCAGGAGGGCGGCCCGGTACCGggTTTCCGTGTAAATGAAAAGGTTCTCGCGAGCTGGTCAGACTGTCGGTTCTACCCTGCTAAAGTTTTGTCCGTCAATAAAGATGCTTCTTACACCGTGAAGTTCTACGATGGCGTCGTCCAGACCGTTAAGGAGATGCACGTAAAGCCCTTTATTAGTGAGAAAATCAGGCAGAAATCCAGTCCATCTGACAGAAATGGAGAGAAGCCGCCGTCTCCACGTGCAGAGAAGCATTCCAGACCGCTGGGTAACCCATCCTGCAGGACCAGGAGAACCCCCCCTAGAACTCCCCAGCGGGACAGTGAGGATGActctgaggaagaggagggggaCTCTGATGAAGGAGCTAAGGAGGAATGGAGCCAAAGGAAATCAAACACGAGATCAATACAGCAGATCAGAGATGTGGGCGGAGCCGAGAGCTTTCTCCTGAGCGAAGAAGATGAGAAAATGGAGCACGAGAGAGTGGCGGAATACATTGGACAGCATAACTACAGCAAAGCATTCCTAAAAAAGACCTCCCTGAACGGAGAACCggacacagacacagaacacAACTCGGATTCAGATTCAGCTGAAAGAATAGAAAACCAAGATGagaaaaaagaggcggagcttTCGGAACCAAGCGAAGAGGGGGAGGAGCATCCACCACAGAGCAGAACATCTGAGGGAGTTCCAGTGGGAGGAATTAAGAGAAGATCAGTCAGAGAGGACAGAGCATCATTAAAGAAGATTAAAACAGAATCTAGTTTGGGTAAAGATGGACCAGAGTGTCCTGTACCGTCAGCACAGATCTGCAGTGGTGATGTGACATTAAAGAACGGGCAATCGGAAATCTCACAAACTCAAAACACGCCTGCTAAATctgGGAAAAAGCAAGGCTTAAATCCAAACCGATTCAGCCGAGAGCCGCtgtacAGAGTGATTAAGAACCAGCCGGCGCCGGTTCTCTCCTTGGATCTGGATCATAACCCGTATAAGTGCAGTTCTCCAGGCTGCAGCAAATCCTTCCGGAAGGCTAAACTCCTGCACTACCACAGAAAGTACTACCACGGAGAGGACCGGCCCGCAGACGAGGAGATGAGTCCAAATACCAGCGTTCTGACTGGAGTAAAGGACCAGTTGGGGCCTTCGGATAACTGGGAGAATCCCAAACCGAGGGGTGGAGTATCAGTTCCACTGTTGAATCACAGTGCCAGTCGGTCTCCCACATCTTCTAAAGCAGAAGGCAGAAGCTCTATTCATATAACAGAGAGGAGGCGAGTCTCTGTGCCCCCTTCAGGTGGCGTGCAGGAACATCAGATACGACCCTCGCTGAAGGAGAAGAGCAGAGAGAACCCACCAGACAGAACCAGTCGCAGAACCGTGGAGAAAAGCCCTGTGAACACAGCTCGGTTGAACAGATCTAAAGAGAGGAAGTCCAGGAGTTTCCTGCGGATCAAattgaagaaaaagaagaagaaaaagaagtccAAGTCAGGCAGTGAGGAGAACGTGGACATCTTGGGGTTTGGGCTGAAGTCCAAACTGAACCTCTTCAGATCCCCCGTCTTCCGCAAGAACGCGGCTGAAGCTTTACTCAGCAGGCGGGGGTGTGACCAGGCGGGAAGGACGGAGCTGGATGGTGAAGACAGTGTATCTGATTGGTCCTCTGACAGTTATGGGTGGAGTGATGAAACTGGGCCGGACCTTCACATCATATCCTCCCGCCTCGGCCGTGGCTCTGTGGTTTCAGCAGCTGTTGGTCGGAAGGTGATTCGCTGTCTTTGTAAGGCAGAGGATGAAAATGACTTCATGATTCAGTGTGCAGAGTGTAGGTGTTGGCAGCATGGCTCCTGCATGGGTCTCCTGCAGGAGAGCGCTCCAGACAGATACGTCTGCTTCATCTGCCAAGATCCACCGGGTCAGAACTGCGGTCAGAGGCAGAGCCTGCGGTACTGGTAtgattgtgattggctgagcagtGGTCACATGTATGGCTTGTCGTTCCTAGAGGAGAATTATTCCCATCAGAATGCCGGGAAGATCACAGCCACTCACCAGCTGCTGGGGGACGTCCAGCACGTGGTGGAGGTGCTCAGCGGCCTACAGCTCAAAATCAGCGTCCTGCAGAATGAAACTCACCCAGACCTGAGACTCTGGTGCCAGCCATGGAAGCAGACAGAGCGATGTCGCAAGAACACTGGCCACAGTGTAGCCTCTGCACGCGCCAAAGGTTCTGTTCCCCAGGATCTCCAGAGAACAGAATCAGAGGAGCATCTCTCAGATATACCTTCCTCACCTGCATCGTTCTGTAACTCGTACATCAGCAGTGAACACTGCTACCCAAAGCCCTGGGTGTTCTACCCGGCACTGGAGGAGCGGCTGGTGGTAGAGAGGTGGACGGAGTCAGAACTGGAGGACGGGCTGCGAGCCTGCAAGAGGGTCCTGCAGTACGAGGAGTGTTATAGAGAGGAGCTCCAGTCTAGTCAGACCAGAACCAATCAGgagaagGTTTTGGACGATTGTCCGAGTGTAGTACTGGCTGGCAACAGGGATGAGCTGACTGGCGGGACCCAGCAGCAGCAATGGCAGATTAACCTGCTGGAGCACATCGAGTCTGTGCAGGAGGAGATCACCCACAGGATGGACTTCATCGAGAAGGAGCTAGATGTGTTGGAGAGCTGGCTGGACTGTACGGGTGAACTGGAGCCTCCAGAACCGCTGGACCGCCTGCCTGAGCTCAAGCACAGTATAAAACAGCTGATGGGTGAACTGGTGAAGATCCAGCAGATCGCCCTGGCGTGCACTACCTGAAGTTTGCAGAACTCCAAAAGGACATCAGCACTGGTCAGGATAGAGACAAGAGGGGGCATAGCAGGGCAAGCAAATGACTGGACTTATTATGGGATGCAGAAACAGGGGAATTCaaaacttgaattttttttttgttgcacttTTTCACTTAAAAAGAGAATCTTCCTCCTAAGAATTTCATGTGAACAACAGGTCACAAAttatatatctgtaataatcattaaaaaacttgattgaataaaaaaaaatgatttcattaCAATACTCCTAAATGTATATACCAATGTTCTGTTTTATACACTCCTGTTAGACCATTAAAATGtgttggatatatatatatacatacagtgtaaatgtgcaattaaatcTCAGCAGGTTTTTACTGAC
>XM_022682652.1
TTACATCCGTCCAGAACAGAACCACCGGAACCGGCTGCGCGCGCGAGAGACGGAGCGAGCACTATTTACTACTGCAGTGTGGAGAAGCGCGTGCTGTGGCCCAATTAGCTACCGCCGTCAGCCGGATGAGTAGGACGCCACCCGCCAAGCGCGGGATTCGGTTTGAGGTCGGGGCGTCTGTGGAGGCGAGGGACAGTCTCAAAAACTGGTACGCTGCCAACATTGAAAAAATCGACTATGAGGACGAGAAGGTTCTGATACACTACCGTCAGTGGAGTCACCGCTATGACGAGTGGTTCGACTGGACCAGTCCGTACCTCAGACCTGTGGAGAGGGTCCAGCTGAGAAGGCAGGGGCTGCAGGAGGGCGGCCCGGTACCGggTTTCCGTGTAAATGAAAAGGTTCTCGCGAGCTGGTCAGACTGTCGGTTCTACCCTGCTAAAGTTTTGTCCGTCAATAAAGATGCTTCTTACACCGTGAAGTTCTACGATGGCGTCGTCCAGACCGTTAAGGAGATGCACGTAAAGCCCTTTATTAGTGAGAAAATCAGGCAGAAATCCAGTCCATCTGACAGAAATGGAGAGAAGCCGCCGTCTCCACGTGCAGAGAAGCATTCCAGACCGCTGGGTAACCCATCCTGCAGGACCAGGAGAACCCCCCCTAGAACTCCCCAGCGGGACAGTGAGGATGActctgaggaagaggagggggaCTCTGATGAAGGAGCTAAGGAGGAATGGAGCCAAAGGAAATCAAACACGAGATCAATACAGCAGATCAGAGATGTGGGCGGAGCCGAGAGCTTTCTCCTGAGCGAAGAAGATGAGAAAATGGAGCACGAGAGAGTGGCGGAATACATTGGACAGCATAACTACAGCAAAGCATTCCTAAAAAAGACCTCCCTGAACGGAGAACCggacacagacacagaacacAACTCGGATTCAGATTCAGCTGAAAGAATAGAAAACCAAGATGagaaaaaagaggcggagcttTCGGAACCAAGCGAAGAGGGGGAGGAGCATCCACCACAGAGCAGAACATCTGAGGGAGTTCCAGTGGGAGGAATTAAGAGAAGATCAGTCAGAGAGGACAGAGCATCATTAAAGAAGATTAAAACAGAATCTAGTTTGGGTAAAGATGGACCAGAGTGTCCTGTACCGTCAGCACAGATCTGCAGTGGTGATGTGACATTAAAGAACGGGCAATCGGAAATCTCACAAACTCAAAACACGCCTGCTAAATctgGGAAAAAGCAAGGCTTAAATCCAAACCGATTCAGCCGAGAGCCGCtgtacAGAGTGATTAAGAACCAGCCGGCGCCGGTTCTCTCCTTGGATCTGGATCATAACCCGTATAAGTGCAGTTCTCCAGGCTGCAGCAAATCCTTCCGGAAGGCTAAACTCCTGCACTACCACAGAAAGTACTACCACGGAGAGGACCGGCCCGCAGACGAGGAGATGAGTCCAAATACCAGCGTTCTGACTGGAGTAAAGGACCAGTTGGGGCCTTCGGATAACTGGGAGAATCCCAAACCGAGGGGTGGAGTATCAGTTCCACTGTTGAATCACAGTGCCAGTCGGTCTCCCACATCTTCTAAAGCAGAAGGCAGAAGCTCTATTCATATAACAGAGAGGAGGCGAGTCTCTGTGCCCCCTTCAGGTGGCGTGCAGGAACATCAGATACGACCCTCGCTGAAGGAGAAGAGCAGAGAGAACCCACCAGACAGAACCAGTCGCAGAACCGTGGAGAAAAGCCCTGTGAACACAGCTCGGTTGAACAGATCTAAAGAGAGGAAGTCCAGGAGTTTCCTGCGGATCAAattgaagaaaaagaagaagaaaaagaagtccAAGTCAGGCAGTGAGGAGAACGTGGACATCTTGGGGTTTGGGCTGAAGTCCAAACTGAACCTCTTCAGATCCCCCGTCTTCCGCAAGAACGCGGCTGAAGCTTTACTCAGCAGGCGGGGGTGTGACCAGGCGGGAAGGACGGAGCTGGATGGTGAAGACAGTGTATCTGATTGGTCCTCTGACAGTTATGGGTGGAGTGATGAAACTGGGCCGGACCTTCACATCATATCCTCCCGCCTCGGCCGTGGCTCTGTGGTTTCAGCAGCTGTTGGTCGGAAGGTGATTCGCTGTCTTTGTAAGGCAGAGGATGAAAATGACTTCATGATTCAGTGTGCAGAGTGTAGGTGTTGGCAGCATGGCTCCTGCATGGGTCTCCTGCAGGAGAGCGCTCCAGACAGATACGTCTGCTTCATCTGCCAAGATCCACCGGGTCAGAACTGCGGTCAGAGGCAGAGCCTGCGGTACTGGTAtgattgtgattggctgagcagtGGTCACATGTATGGCTTGTCGTTCCTAGAGGAGAATTATTCCCATCAGAATGCCGGGAAGATCACAGCCACTCACCAGCTGCTGGGGGACGTCCAGCACGTGGTGGAGGTGCTCAGCGGCCTACAGCTCAAAATCAGCGTCCTGCAGAATGAAACTCACCCAGACCTGAGACTCTGGTGCCAGCCATGGAAGCAGACAGAGCGATGTCGCAAGAACACTGGCCACAGTGTAGCCTCTGCACGCGCCAAAGGTTCTGTTCCCCAGGATCTCCAGAGAACAGAATCAGAGGAGCATCTCTCAGATATACCTTCCTCACCTGCATCGTTCTGTAACTCGTACATCAGCAGTGAACACTGCTACCCAAAGCCCTGGGTGTTCTACCCGGCACTGGAGGAGCGGCTGGTGGTAGAGAGGTGGACGGAGTCAGAACTGGAGGACGGGCTGCGAGCCTGCAAGAGGGTCCTGCAGTACGAGGAGTGTTATAGAGAGGAGCTCCAGTCTAGTCAGACCAGAACCAATCAGgagaagGTTTTGGACGATTGTCCGAGTGTAGTACTGGCTGGCAACAGGGATGAGCTGACTGGCGGGACCCAGCAGCAGCAATGGCAGATTAACCTGCTGGAGCACATCGAGTCTGTGCAGGAGGAGATCACCCACAGGATGGACTTCATCGAGAAGGAGCTAGATGTGTTGGAGAGCTGGCTGGACTGTACGGGTGAACTGGAGCCTCCAGAACCGCTGGACCGCCTGCCTGAGCTCAAGCACAGTATAAAACAGCTGATGGGTGAACTGGTGAAGATCCAGCAGATCGCCCTGGCGTGCACTACCTGAAGTTTGCAGAACTCCAAAAGGACATCAGCACTGGTCAGGATAGAGACAAGAGGGGGCATAGCAGGGCAAGCAAATGACTGGACTTATTATGGGATGCAGAAACAGGGGAATTCaaaacttgaattttttttttgttgcacttTTTCACTTAAAAAGAGAATCTTCCTCCTAAGAATTTCATGTGAACAACAGGTCACAAAttatatatctgtaataatcattaaaaaacttgattgaataaaaaaaaatgatttcattaCAATACTCCTAAATGTATATACCAATGTTCTGTTTTATACACTCCTGTTAGACCATTAAAATGtgttggatatatatatatacatacagtgtaaatgtgcaattaaatcTCAGCAGGTTTTTACTGAC

Function

symbol description
phf20 Predicted to enable DNA binding activity and metal ion binding activity. Involved in histone H4-K16 acetylation; histone H4-K5 acetylation; and histone H4-K8 acetylation. Located in cytosol; nuclear membrane; and nucleoplasm. Part of MLL1 complex and histone acetyltransferase complex.

NR:

description
PREDICTED: PHD finger protein 20 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260751 False 640 lncRNA 0.47 2 22786334 22788955
TU260753 False 537 TUCP 0.48 3 22786334 22788955
XM_022682651.1 True 3673 mRNA 0.51 18 22786163 22803642
XM_022682652.1 False 3566 mRNA 0.51 18 22786163 22803400

Neighbor

gene id symbol gene type direction distance location
LOC103040941 ndrg3,LOC108412994,LOC107655061,LOC107727846,LOC107749481,LOC107562126 coding downstream 3691 22739733 ~ 22782472 (-)
LOC103040317 faim2 coding downstream 80674 22693076 ~ 22705489 (-)
LOC103024753 LOC108424569 coding downstream 146615 22460458 ~ 22639548 (-)
eef1akmt3 NA coding downstream 483073 22297852 ~ 22303090 (-)
LOC111195450 NA coding downstream 492625 22286609 ~ 22293538 (-)
LOC103042162 LOC108412995 coding upstream 1939 22805581 ~ 22840324 (-)
LOC103025695 sulf2a,LOC108412941,LOC107655065,LOC107749484,LOC107685697,LOC107600506 coding upstream 46499 22850141 ~ 22925668 (-)
timm17a timm17a,LOC107727855,LOC107554688,LOC106582745 coding upstream 136688 22940330 ~ 22945009 (-)
lmod1 NA coding upstream 148082 22951724 ~ 22959046 (-)
shisa4 shisa4,LOC107561500,LOC107727880,LOC107655068,LOC107749490,LOC107685700 coding upstream 160066 22963708 ~ 22972405 (-)
G192145 NA non-coding downstream 49921 22735091 ~ 22736242 (-)
G192149 NA non-coding downstream 98025 22684675 ~ 22688138 (-)
G192138 NA non-coding downstream 132316 22609381 ~ 22653847 (-)
G192137 NA non-coding downstream 253447 22532454 ~ 22532716 (-)
G192120 NA non-coding downstream 344707 22407246 ~ 22441456 (-)
G192235 NA non-coding upstream 135279 22938921 ~ 22939154 (-)
G192237 NA non-coding upstream 147365 22951007 ~ 22951326 (-)
G192232 NA non-coding upstream 157605 22961247 ~ 22962809 (-)
G192240 NA non-coding upstream 227010 23030652 ~ 23031070 (-)
LOC111195460 NA non-coding upstream 295196 23098838 ~ 23100988 (-)
amhr2 NA other downstream 63258 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 423705 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 934521 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 1241332 21510924 ~ 21544831 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other downstream 1349710 21430016 ~ 21436453 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 250991 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 1235604 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 2408033 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 3071268 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3907611 26711253 ~ 26724106 (-)

Expression


Co-expression Network