G192428


Basic Information

Item Value
gene id G192428
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23544535 ~ 23559176 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU261089
gaagttttaataaaaatgcttcTTGGCATAGCCTCCGTGAACAGACTGCAGAAATATTACATCATCGGTACCAAAAATAGTTCATGCCAGCTTCAGACCCAGTGAGCTAGGAGCCAGTGGGCAGTGAaacatacaatatttaaaagaaattcaGTCACAtagaaaatggatggatggctgtAGCTTGGTATGGTTGTTATATTATGGTCTATCCAGCTGTTTCTTCCTGAACAATTACACACACGCCAAAAGAACTAAGAAGAACAACTGGGTGTCATACTGGCTGCCATATtggatattttatattattcatcAGAAAGGCCTcagatactgttttttttttatagctgagccaaaatacagtatacagctcCAGCATCCAATTACACAAGTCTGTCtgggttaaaatatatatatttatattgtaccGTTACTGGAGCTGAATAATTGGCATGTTTCATGTGTTGGCGCTGCCATTAGCGTAGTTGTGTAAGCGCTTCTGTTTCAGGCTTCACAGCTTCTGACCATCTGCGGCTGTGAAGCTCCGAGCTAAAGCGTATTCTGCCAGTCTAATATTCACAACCCAACAGCAACACGGGCAGCAATTACAGCCTGAGCCCTGAAAACGCAGGAAATGAGATCAGCCAGAGGATAAACAGGAGCTCAACCCAATTAAACAtaaagcttattgaaacaaacaGTACGGGAGGTTATTGGGGTCTTCAGGGGGGGCAGGACTGGAAAAACATACAGTGGATGAGATGGAGAGACTCTAGAATCTACAGAATATAAAGTAGAAGTTAGATTCACTGTTGAGCCCTTACATTAATACCAACAATTAACAAACAATTAACAAAACTGACTATCTGGTTACACTGCCGTCTGTCAAGGGTCAGGACATATACCCTGACAGGCCAGAAGTCATATGAGAGCAGTATGTTAAACTAAGCATGAAGTGGCACCTCAAAATCATAAAGTgtggtgaggtgttatcttgtgagtgaggccgATCACTggccaacatttaaaaaaattatgggagttgaacTGATGCCTGAGAGTGAATGGGGaataaccgtgctaagtgctagttagctcttttgccattcagaggcgagtatatcggactgtagcttgcTGATAACCCCCCGGCTaccactgctagagcagcattagcattacctgctaaccacgctaagcgctagttatctatttcgccgttcagaggtgagtattatcagactgtatctTGCTGTtaaccctagctagcactgctctTTCTCGCTAGTAAgatctttcgccattcagaggcaagtatagtggactgtagcttgctgctaacccccgactaccactgctggagcagcattagcattacccgctaaccacgctaagtgctagttagccctttcactgttcagagccAAAAATATCAGGCTGTAGCTTGCTGATAACCCCCCGGCTaccactgctagagcagcattagcattacctgctaaccacgctaagcgctagttatctatttcgccgttcagaggtgagtattatcagactgtatctTGCTGTtaaccctagctagcactgctctTTCTCGCTAGTAAgatctttcgccattcagaggcaagtatagtggactgtagcttgctgctaacccaggctaggtctgctggagcagcattagcattacctgcaaACCGAGCTAAgggctagttagctcttttgccattcaaaggtgagtatatcagactgtagcttgGTACTAATCTCGCCTAGCActcctggagcagcattagcattaccggctaactgcactagctctttcgctgttaaGAGATATGTATTATTGGAGtgtagcctgctactaaccctggctagcaccgctggagcagcattagcattacccactattGTAGCCTTCCCATTTACCAtggtaaaacaagctatgtgggacgaaccgctagctaatatcacagtgtagcgctgtttggctagccttagtggaaatttaagcctactgtagaaaaacagaaagcaCTTTACTTccccaaataaacagctttcaggagagaaatctgtgtagattaacatccagcactcgtttggctttaaaaataatgtgcatTATAATCCAGCGTGCCTTgcgcatgaaaatagactagaaaaaaGACGATTATTGACACTGAGctttaaaatctgaaaaatacagtggtAATAATAGCGACTAgtagtgtctggctagaactgtccatgcaaacaaGTGCTAAcctgatttttggcatgttagcgtatatatttatttttgaactTGGCTTTAATTGCTTTAATTTTATGGATAATTAGGGAAAATGGTGTCACAAACTAGTAAATTGCTCAGAGAGAGTTAACTGTTGGCTTGTGcagttatttttaaagcttcagcctaaaaaaaaaaaaaacctgcagatGATGCAAGTTGCTCTACATCCTGAAGCTCTGTGGAAGTCTGACGGCTAAACgccttaataattaattatatactgtacaacTGTAAGGAGTATTATCTGAGAAATGCTGTAAAAACATGTCTTAAGATGCTCGCTCTTCTACAGTACcagtattcatgtttttttaatacatctagaatgatttttttgctttttttattatttttttcttagtttattgTTTCATTAATAAGCCATTTAGTATAGGATAATAGCAAAATAGCCATGACTAAACAGCTTAAATAAACCTCACACAATGAACAGCAACTCATCAAACGTATTCACATGAACGAATGACtttgacaaaacaaaaaaaacaatgaaaagaaaGAGGAATTAGAATAGCGCACCAAGCTTAAGTACCATAGAGCTCTAAGTAAAAGACAAAATACGACTCAATGCAAATCAATGCAAACCTAATACCATAATACATATACAGGAGCACAAAGTAAagcaaatattttgttttttgttgtgttgtgttaatggaatatgaattatgtttttaagcaaatatgggctttacttaaagcagcactaggtaggattttcttgatttttgatctttttaaagaagt
>TU261099
gaagttttaataaaaatgcttcTTGGCATAGCCTCCGTGAACAGACTGCAGAAATATTACATCATCGGTACCAAAAATAGTTCATGCCAGCTTCAGACCCAGTGAGCTAGGAGCCAGTGGGCAGTGAaacatacaatatttaaaagaaattcaGTCACAtagaaaatggatggatggctgtAGCTTGGTATGGTTGTTATATTATGGTCTATCCAGCTGTTTCTTCCTGAACAATTACACACACGCCAAAAGAACTAAGAAGAACAACTGGGTGTCATACTGGCTGCCATATtggatattttatattattcatcAGAAAGGCCTcagatactgttttttttttatagctgagccaaaatacagtatacagctcCAGCATCCAATTACACAAGTCTGTCtgggttaaaatatatatatttatattgtaccGTTACTGGAGCTGAATAATTGGCATGTTTCATGTGTTGGCGCTGCCATTAGCGTAGTTGTGTAAGCGCTTCTGTTTCAGGCTTCACAGCTTCTGACCATCTGCGGCTGTGAAGCTCCGAGCTAAAGCGTATTCTGCCAGTCTAATATTCACAACCCAACAGCAACACGGGCAGCAATTACAGCCTGAGCCCTGAAAACGCAGGAAATGAGATCAGCCAGAGGATAAACAGGAGCTCAACCCAATTAAACAtaaagcttattgaaacaaacaGTACGGGAGGTTATTGGGGTCTTCAGGGGGGGCAGGACTGGAAAAACATACAGTGGATGAGATGGAGAGACTCTAGAATCTACAGAATATAAAGTAGAAGTTAGATTCACTGTTGAGCCCTTACATTAATACCAACAATTAACAAACAATTAACAAAACTGACTATCTGGTTACACTGCCGTCTGTCAAGGGTCAGGACATATACCCTGACAGGCCAGAAGTCATATGAGAGCAGTATGTTAAACTAAGCATGAAGTGGCACCTCAAAATCATAAAGTgtggtgaggtgttatcttgtgagtgaggccgATCACTggccaacatttaaaaaaattatgggagttgaacTGATGCCTGAGAGTGAATGGGGaataaccgtgctaagtgctagttagctcttttgccattcagaggcgagtatatcggactgtagcttgcTGATAACCCCCCGGCTaccactgctagagcagcattagcattacctgctaaccacgctaagcgctagttatctatttcgccgttcagaggtgagtattatcagactgtatctTGCTGTtaaccctagctagcactgctctTTCTCGCTAGTAAgatctttcgccattcagaggcaagtatagtggactgtagcttgctgctaacccccgactaccactgctggagcagcattagcattacccgctaaccacgctaagtgctagttagccctttcactgttcagagccAAAAATATCAGGCTGTAGCTTGCTGATAACCCCCCGGCTaccactgctagagcagcattagcattacctgctaaccacgctaagcgctagttatctatttcgccgttcagaggtgagtattatcagactgtatctTGCTGTtaaccctagctagcactgctctTTCTCGCTAGTAAgatctttcgccattcagaggcaagtatagtggactgtagcttgctgctaacccaggctaggtctgctggagcagcattagcattacctgcaaACCGAGCTAAgggctagttagctcttttgccattcaaaggtgagtatatcagactgtagcttgGTACTAATCTCGCCTAGCActcctggagcagcattagcattaccggctaactgcactagctctttcgctgttaaGAGATATGTATTATTGGAGtgtagcctgctactaaccctggctagcaccgctggagcagcattagcattacccactattGTAGCCTTCCCATTTACCAtggtaaaacaagctatgtgtagcgctgtttggctagccttagtggaaatttaagcctactgtagaaaaacagaaagcaCTTTACTTccccaaataaacagctttcaggagagaaatctgtgtagattaacatccagcactcgtttggctttaaaaataatgtgcatTATAATCCAGCGTGCCTTgcgcatgaaaatagactagaaaaaaGACGATTATTGACACTGAGctttaaaatctgaaaaatacagtggtAATAATAGCGACTAgtagtgtctggctagaactgtccatgcaaacaaGTGCTAAcctgatttttggcatgttagcgtatatatttatttttgaactTGGCTTTAATTGCTTTAATTTTATGGATAATTAGGGAAAATGGTGTCACAAACTAGTAAATTGCTCAGAGAGAGTTAACTGTTGGCTTGTGcagttatttttaaagcttcagcctaaaaaaaaaaaaaacctgcagatGATGCAAGTTGCTCTACATCCTGAAGCTCTGTGGAAGTCTGACGGCTAAACgccttaataattaattatatactgtacaacTGTAAGGAGTATTATCTGAGAAATGCTGTAAAAACATGTCTTAAGATGCTCGCTCTTCTACAGTACcagtattcatgtttttttaatacatctagaatgatttttttgctttttttattatttttttcttagtttattgTTTCATTAATAAGCCATTTAGTATAGGATAATAGCAAAATAGCCATGACTAAACAGCTTAAATAAACCTCACACAATGAACAGCAACTCATCAAACGTATTCACATGAACGAATGACtttgacaaaacaaaaaaaacaatgaaaagaaaGAGGAATTAGAATAGCGCACCAAGCTTAAGTACCATAGAGCTCTAAGTAAAAGACAAAATACGACTCAATGCAAATCAATGCAAACCTAATACCATAATACATATACAGGAGCACAAAGTAAagcaaatattttgttttttgttgtgttgtgttaatggaatatgaattatgtttttaagcaaatatgggctttacttaaagcagcactaggtaggattttcttgatttttgatctttttaaagaagt
>TU261101
TGAAAGCCAATaaaacgagaaagagaaactaatccgcctgaaacatttattacactctacaactgtagggggagcccgcgagcacaaaatctcaattctacctagtggagctttaagcaGCACACTGAAGCAtacaatattgtattttaaaaatgagaaGCAGAAAAATACCCTGGCCAGAATATCCCTTTAGTGAGTATTTATGGTCCCTGTGTCCAGAAGAGTGGTCTGTTCTCAAGGCAGTGAAGCCCCACAACTGcaaatatactagtgcatctcaaaaaaatggaatattattgaaaagttaccttatttcagtaattcagttcaaaatgtgaaactctttatctatctattatatgtatcacacacacagtgatctatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261089 True 3061 lncRNA 0.40 2 23545179 23548436
TU261099 False 3033 lncRNA 0.40 3 23545179 23548436
TU261101 False 385 lncRNA 0.37 2 23544535 23559176

Neighbor

gene id symbol gene type direction distance location
LOC103047010 syt6,LOC107727826,LOC107560238,LOC107655078 coding downstream 262516 23208885 ~ 23282019 (-)
LOC103045076 gpr25 coding downstream 382116 23159668 ~ 23162419 (-)
c22h1orf106 LOC108410711,LOC107727857,LOC107655074 coding downstream 400127 23104254 ~ 23144408 (-)
rnpep rnpep coding downstream 445971 23087526 ~ 23098564 (-)
LOC103045443 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107749489 coding downstream 462407 23074119 ~ 23082128 (-)
nfs1 nfs1,LOC107601922,LOC107559867 coding upstream 50077 23609253 ~ 23622118 (-)
LOC103042624 rbm39,LOC107655082,LOC107727761,LOC107602070 coding upstream 65734 23624910 ~ 23635826 (-)
LOC103041805 gem,rem1,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107685743,LOC107554936 coding upstream 89090 23648266 ~ 23660292 (-)
LOC103042306 NA coding upstream 113932 23673108 ~ 23680391 (-)
LOC103041505 pnp4a,LOC103041505,LOC108411380,LOC107727193,LOC107685744,LOC107655042,LOC107727769,LOC107559547 coding upstream 123033 23682209 ~ 23696247 (-)
G192365 NA non-coding downstream 215222 23329074 ~ 23329313 (-)
G192336 NA non-coding downstream 319932 23216176 ~ 23224603 (-)
G192335 NA non-coding downstream 321166 23215590 ~ 23223369 (-)
G192293 NA non-coding downstream 389493 23154582 ~ 23155042 (-)
G192288 NA non-coding downstream 438908 23105108 ~ 23105627 (-)
G192439 dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776 non-coding upstream 43143 23602319 ~ 23607031 (-)
G192484 NA non-coding upstream 317459 23876635 ~ 23884538 (-)
G192574 NA non-coding upstream 433020 23992196 ~ 24049734 (-)
G192578 NA non-coding upstream 496118 24055294 ~ 24055585 (-)
G192579 NA non-coding upstream 523628 24082804 ~ 24083308 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 485730 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 740893 22786163 ~ 22803642 (-)
amhr2 NA other downstream 821630 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 1182077 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1692893 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 480070 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 1652499 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2315734 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3152077 26711253 ~ 26724106 (-)
G193097 NA other upstream 3472487 27031663 ~ 27033089 (-)

Expression


Co-expression Network