G192439 (dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776)


Basic Information

Item Value
gene id G192439
gene name dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23602319 ~ 23607031 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU261126
TTTTGACACTCACATGGAATCAAATGAGCATTTTACCATTTACAAAAGAAGGCATGAGCAGAAACTTTGTACATACcgttttttatacatttttcttttctcatatatacaataaaaatgaactaTGTACAACACATTTTACCCAGTCCTCTCAcaggacaaaaataaaagacacaCCTGGAGGTGTACAGTGTTTCACACAGAAAAGGAATGCAATTATAAAAGTGCCACATTGATGgagtactgctgctgctgctggaggaacCCTTGAGCAGACAGGACATGCTGGAGACCAAACAACCCAAAACCAGCACACGGTACCGCACCCTCAGACAGACGCCTCACACTTCAGACAAGCTTTAGACATTAGACacggtttgttttgtttagacCGACACTGACAGAGGCAGATGTAACACACACTACTTTAAACTGCTAGTCCATGTCCATGAGACATTGTGAGAAGCAGGTGACACCAGCCCCTGAGATTAAACTGAacaaaaagcaaaaaacgtGATGTTTAACagcaacattttatatatactgatcagccataacattatcaCCATTGATAAataaagtgcaaaacaaaactaaacaacgACTATCATTATCTACATCTAATGGTAAGAAttatgtgaattatgggagttggagtaaggtctgatagtgggtgcagatagATGGTGCCCTCCATTTCTGCAGGAATGTAATATACTGGAAATATAAAAGGCAGGCATGAAGAAACTGAGCCACAATATGCAATAGTGAGtctataaaccaatcagaagTGCTCAGAGAAAGGCACCACCTTTCATATAACATACTGAATTTAAAGGATTCGCTGTAATGTTTTCTTCCCTCTTGTGGCACAAGAGGGACCTATTGAAAGGTAATCaggtttaatgttatggctgatatatatatacatacacagctctgaaaaaaattaagagaccacttcagtttctgaatcaggttctctgattttgctatttatttgtataagtttgagtaaaatgtgaaatggctgaaataacaaaaaatatgcagatgcaaagctttcagagttcagaaatcaatatttggtggaataaccctgttttttaatcacagttttcatgcatcttggcatgttctcctccaccagtctcacacactgcttttggataattttatgccactcctggtgtaaagatttaagcagttcagtttggtttgaaggcttgtgatcatccatcttcctcttgattgtattctagaagtttttcaatttggtaaaatcaaagaaactcatcatttttaagtggtctcttgttccagagctctatatactcatatacatacaaatatcAGTCAGAAATattgtttaactgttttttttttttactttttgacatatTTCGAGTGTGGAAGTTGTGCTTTATTCTATTTCAATTTCAttatgaatagaccaatagaaatgctccaaaatgccTTAGAATcaaatctttttacactgacttttttttttttacgttctGTAAAGTTGCGTTTTATATAAATCATACCAGTTTAGGGTGACAGTGGCGATTTATATTTAAGTGCTGGTTGTGGAGATTTACCCTGTAATTCCAAAAGGACAGAATGTTTATGAACGAACGACATCCGTCTCTGTGTGCTTTCTTAGAAGGAGCGTCTACACCTGTCGGCAGCTGTGTGCTATGACATCATCAGATTCTACGATCAGGACAAAcgattaataaaaaacatgtattgttTGTGTTGAAGTACAGTTGTATTAAAACCTTTCGGACACCCCTTGACTCAAACTGCATATTTAATGGATTTCTCAGGCTTAACTTTGTTAAAACTTCGTTAAAAAATGAAGTTTTAGCAAATGTTGATTCAGCTCTGTGTCTTCAGAGGTTTCTTTATGAAAGTCAATGGTTCTAAATAAAACTATGAAAGCTCAAAGGCAAAATTCTGTATACGTGAAAATACAAGAAAAtctttgtttaaaacatttaattatttaatctaTAAACCATTTACCACAGCACTAGTAATTTTATGCAAGAGTTTAGACACCCTATCATCTGTCTCAGAACTTAGTCAGGTCTTAATTGATACGTTAAGTTATGACCTGGATAGGCAGGTAAAGAACTGAcgattatttaactttttaccTGTAGTTGGTTTGCTCTGGTTCAAATCACAGCTTTCCACttggtttgatttgttttcacacaggcaaaaatCCAAGTGTGAAAATATTTTCTCTGCTGATTGGTCTGCTGTACTCATCTGGAATGAAGCAaggaagtaaatacaggaagaagatcCTACCTACCAAAGCAGAGTCTGCAGGTGTTAAAACATCCATTATCCCTGATTAGCATTGGAGATCGAACATCACTCTTCAAATCATGGACAGGCTCTTCTAAAAAGCTGCAGATCTGCCTATAAATTAAGAGAAGAAGCCTATAAAAGTGCTTCCAAAAAGAGTGTTGACTCATCagggtgtccaaacatttgcacATATCACATTTTCTATCACATAAAGTGcagaaatacaaacaaaatatgcATTTTGGTCAGGGGGTTCCCAAACGTTTGCCGACAACTTGATTatcttgtgatttttttttttttcacaaatcgCTTCACAAAGATCAAACATCGTCAACACatctataaaaatgtaaaaatacgaAATATGTTTGGTGCAAAAcgaaacacaaaaaaagcagCTAATACAATAAAGTATGAGCAGGCATTCGTAGTTCCAGTGCTCAAACCCCACCTTCAGCTCCTGTGTGCTTTTATTATACAAAGAGTTTTAGATATGAGGTGCAGTGACAGCTTCTGACCAGCAGAGGGCGCGAGATGCCTGATTGTCTACAATTCTGGTAGAGTGAACGATGCCACAACAATGAACCTGCAGGACATTTCTGGCGATGAAGAGAATTAAATTGAGcggaaaactaaaaaatattactAAGAGGTAAATTATAATGAtttgtaggcctgtcacgataatttatttacttgttATGACCTCAATAACTtgccttttatgttttttttattcactggcAACCCCAAAAACCTATGAAAAAAAGTACATATGGTTActgtaaagaatatttaaaGTGTTATTGTGTAATTATTTAGGCCAAATCTTACTCTACAAAAGCTGTAATAATctgtaattaatgtattaattgctattcttattataaaataatgtgttGTGATCTTTCTGTAATTTTTCAATCCTTTACTAACAATTTTTCGCTGTTAACTTGCTGTAAAGATTTACAAGAAACTTTTTTCACAGTGCAGAATAGACCACAAAGTAGAGCATGGCAGTACTAGAACCTACGAAGAAAAGTGAAAgctaattttttttaccaaatgtatgtgatttagaacacatttaacctgtttaaatgtttattttacagtttagagatggtttgtgaaataaaaaggctttttaaacaGTCAGCATTACATATATTTCATAGCAttcatatattttcttatattcatatatgtttcaaaacagtggttttattgtatttatgtttgATTTCTTTGGGATTCTTTTTAAATAGCATGTTTTATGGTACAaataaaatacgttttttttttttttttttgcttttttgcaaaaaaactttttttgcattcttGTGCTATTTCAGTGCAATTATTTCTCGGACCATGTATTGTCTAATCGTACAATAAatagttatcgtgacaggcctaatgtttacttttttattgttatcattTTTCGTCtgttttctgatttgtttaGATTGAACAAAATAATCTACTGACTCCCTTTAAAAACTTTGGTTTAAATTtgctttgttttgtctttttaagtATGAATTacgattatatattttaaatcaacCACAAACTAAGTGTTCGATAATCACGGCTTCACTTTAGACCACATTTGCTGCAGTGGACAGAAATCACGGCTGAACAGAACTGAAGAAGGAACATATGGTGGCGGGAGAACACGGCGAGTGTGCTTGGAATCTGCACTGCTTTACTTGTTGCTTGTATTTTATGGCACTGGCCTACAGTCACATAATGTCTACAAAAAACTCGCAGGGGTTTCCCATGGCGTGCTGAAACGACTGCCGGCTAGCCGTGAGCTCCGGGGGGACGGATGCTAGCTCGCGGACCGGCGGGGCCCCTGGAGGCCCACTGCTAACGGCCCCTTTAGGGGTAAGTCTGGCTAGGCTGTAGGGAGGAGGCAGTCCGGGGGGTCCGTAAGAGGAAGCGTGGCTCCGCTCACTGTGTGCACAAGAGACACGCCCGTGCTTGGAAAAGGAGGCGTGGCTGTATGAGAAGGAGGCGCGGCTGTGGTGGGATGGCACTCGGCTTCTGTGAGAGTGGGTTTTGCTGTGTCCGGAGTGGGCGCGGCTTTGGGACGAGTGGGCGTGGCTACGGTGACTAAGCTGACTGGCTGTGCGCTCACCCCGCCTACCGCCCGCTCGAGTGCCCGTATCAGATTCGCTGCCCCCGCTGCCCGTCATCTTGCGCTCTTTTTCCTGAGGAGCAGGGCGCTGGCTTCTCCCGGCACTGGGGTTGGAACTGCTGCTGCGG

Function

symbol description
dvl1 Enables frizzled binding activity; identical protein binding activity; and protein kinase binding activity. Involved in several processes, including Wnt signaling pathway; protein stabilization; and regulation of cellular protein metabolic process. Located in cytoplasmic vesicle; growth cone; and lateral plasma membrane. Implicated in DiGeorge syndrome and autosomal dominant Robinow syndrome 2.

NR:

description
PREDICTED: segment polarity protein dishevelled homolog DVL-1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261126 True 4614 lncRNA 0.38 4 23602319 23607031

Neighbor

gene id symbol gene type direction distance location
LOC103047010 syt6,LOC107727826,LOC107560238,LOC107655078 coding downstream 320300 23208885 ~ 23282019 (-)
LOC103045076 gpr25 coding downstream 439900 23159668 ~ 23162419 (-)
c22h1orf106 LOC108410711,LOC107727857,LOC107655074 coding downstream 457911 23104254 ~ 23144408 (-)
rnpep rnpep coding downstream 503755 23087526 ~ 23098564 (-)
LOC103045443 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107749489 coding downstream 520191 23074119 ~ 23082128 (-)
nfs1 nfs1,LOC107601922,LOC107559867 coding upstream 2222 23609253 ~ 23622118 (-)
LOC103042624 rbm39,LOC107655082,LOC107727761,LOC107602070 coding upstream 17879 23624910 ~ 23635826 (-)
LOC103041805 gem,rem1,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107685743,LOC107554936 coding upstream 41235 23648266 ~ 23660292 (-)
LOC103042306 NA coding upstream 66077 23673108 ~ 23680391 (-)
LOC103041505 pnp4a,LOC103041505,LOC108411380,LOC107727193,LOC107685744,LOC107655042,LOC107727769,LOC107559547 coding upstream 75178 23682209 ~ 23696247 (-)
G192428 NA non-coding downstream 43143 23544535 ~ 23559176 (-)
G192365 NA non-coding downstream 273006 23329074 ~ 23329313 (-)
G192336 NA non-coding downstream 377716 23216176 ~ 23224603 (-)
G192335 NA non-coding downstream 378950 23215590 ~ 23223369 (-)
G192293 NA non-coding downstream 447277 23154582 ~ 23155042 (-)
G192484 NA non-coding upstream 269604 23876635 ~ 23884538 (-)
G192574 NA non-coding upstream 385165 23992196 ~ 24049734 (-)
G192578 NA non-coding upstream 448263 24055294 ~ 24055585 (-)
G192579 NA non-coding upstream 475773 24082804 ~ 24083308 (-)
G192589 NA non-coding upstream 653603 24260634 ~ 24262555 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 543514 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 798677 22786163 ~ 22803642 (-)
amhr2 NA other downstream 879414 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 1239861 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1750677 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 432215 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 1604644 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2267879 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3104222 26711253 ~ 26724106 (-)
G193097 NA other upstream 3424632 27031663 ~ 27033089 (-)

Expression


Co-expression Network