Gene
RNA
| Item | Value |
|---|---|
| gene id | G71218 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 5535852 ~ 5538384 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU81198 | True | 547 | TUCP | 0.50 | 3 | 5535852 | 5538384 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_05523886_05527548 | NA | coding | upstream | 7691 | 5523886 ~ 5528161 (+) |
| CI01000012_05495596_05510317 | NA | coding | upstream | 24880 | 5495357 ~ 5510972 (+) |
| CI01000012_05425849_05469157 | PCNX, PCNX1 | coding | upstream | 66695 | 5425849 ~ 5469157 (+) |
| CI01000012_05419501_05424708 | MED6 | coding | upstream | 111026 | 5419501 ~ 5424826 (+) |
| CI01000012_05390382_05407802 | MAP3K9 | coding | upstream | 127708 | 5390014 ~ 5408144 (+) |
| CI01000012_05551775_05553851 | NA | coding | downstream | 13299 | 5551683 ~ 5554363 (+) |
| CI01000012_05565127_05567009 | NA | coding | downstream | 26555 | 5564939 ~ 5567230 (+) |
| CI01000012_05648602_05650699 | MYCLA | coding | downstream | 110218 | 5648602 ~ 5651197 (+) |
| CI01000012_05659039_05669397 | NA | coding | downstream | 120655 | 5659039 ~ 5669584 (+) |
| CI01000012_05708007_05735678 | MAP3K4 | coding | downstream | 169623 | 5708007 ~ 5735985 (+) |
| G71225 | NA | non-coding | upstream | 124336 | 5409222 ~ 5411516 (+) |
| G71171 | NA | non-coding | upstream | 230279 | 5304404 ~ 5305573 (+) |
| G71529 | NA | non-coding | upstream | 373419 | 5161509 ~ 5162433 (+) |
| G71172 | NA | non-coding | upstream | 395884 | 5137470 ~ 5139968 (+) |
| G71523 | NA | non-coding | upstream | 501585 | 5034028 ~ 5034267 (+) |
| G71548 | NA | non-coding | downstream | 12109 | 5550493 ~ 5561433 (+) |
| G71559 | NA | non-coding | downstream | 34433 | 5572817 ~ 5573228 (+) |
| G71562 | NA | non-coding | downstream | 70466 | 5608850 ~ 5611605 (+) |
| G71599 | NA | non-coding | downstream | 98984 | 5637368 ~ 5637671 (+) |
| G71606 | NA | non-coding | downstream | 133370 | 5671754 ~ 5672210 (+) |
| G71199 | NA | other | upstream | 119067 | 5413250 ~ 5416785 (+) |
| CI01000012_05177587_05180517 | SRSF5A | other | upstream | 354882 | 5176895 ~ 5180970 (+) |
| CI01000012_04495631_04501066 | NA | other | upstream | 1035763 | 4495631 ~ 4501066 (+) |
| CI01000012_04424569_04425090 | NA | other | upstream | 1110205 | 4424569 ~ 4425756 (+) |
| G70029 | NA | other | upstream | 2904467 | 2622478 ~ 2631385 (+) |
| G71221 | NA | other | downstream | 141 | 5538525 ~ 5540456 (+) |
| G71623 | NA | other | downstream | 275133 | 5813517 ~ 5816605 (+) |
| CI01000012_05923216_05928055 | SRD5A2B | other | downstream | 384782 | 5922385 ~ 5929186 (+) |
| CI01000012_07806089_07811902 | BEND3 | other | downstream | 2267719 | 7805248 ~ 7811902 (+) |
