cntn2 (cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094)


Basic Information

Item Value
gene id cntn2
gene name cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 24039246 ~ 24105898 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU261315
aatttgggagaaatgttgtctgtagtttatagaataaaacagcaatgttcattttactcaaacatatacctataaatagcaaattcagagaaactgagcTGTATAGACAtgtgtaacaaacacatgaacattTTTCAATTCCATTATGCCCTGCTTTCCACCAGTGTACTgatctctgtatctgtatcctCTGTGCTCTCAGTCCTACACCGAAGCTGCGCTGGAGGAAGGTGGATGGGATCTTACCCTCGAAGGTGGGAGCGAGTGCAGATGGACCTATCCTGACCCTTCCTGACCTGAGCTTTGATGATGAGGGCGTGTATGAGTGTGAAGCCTACAGCTCAGAGGGACGGGATACACACCAGGGGCGCGTCTCTGTCCAAGctCAGCCCGAGTGGCTGCAGGTGATGAGTGATTCCGAGGTGGAGATCAGTTCCGAGCTGCACTGGAGTTGTGTAGCTGCAGGAAAACCACGACCGAGCATCCGCTGGCTACGCAACGGACTGCCTCTCAGCACACagg
>XM_022682684.1
agagagatactgagagagagagagagaagagagagagagagacccatcCTACTGCGACAGGCTGCTTCACTATTAACAAAGCTGAGGCAGGAGGAGAGAGGAGGCAGAGAATATCGCTCCGGCGCTCCTGACTGAAACACACGGGGCTCGGTGGCTCGGTTCGCTCGGCGGGTCGCTGGTCGGGGTTTGGGCCGGTTACCGGAGGAGACTCCGCGGAGAACTGCAGACTCACCGTCAGGTGCAGGAGCCAGCGGAGGGCCGTCTCGCCTGGGCGTGGCTGAGGAAGGAGGATGAGGAGTCTATTGTTTGTGCTGGCACTCAGCTCGCTGGCACCGAGATACGCTGCGAGTGGGGAAGTGTGTGTGTCGGGTCATGACAGCGGGCCAGTGTTTGAAGAGCAGCCATCCAGTCTGATTTACCCAGAAGGCCTGCCTGAGGGGAAAGTGACCCTGAATTGCCAGGCCAGAGCCAGCCCTGCGGCGTCCTACAGGTGGCGAGTGAACGGGTCGGAGGTGCTGATTGGAGAAGACTCTCACTACACGCTGGTGGCCGGAAACCTGGTGATCAATAACCCACAACATGGACGCGATTCTGGCTCTTACCAGTGTCTCGCTGTCAACCGCTGTGGCACCATCGTTAGCCGCGCCGCTAACCTCAAATTCGGCTaccTCCGTGATTTCCCTTTAGAAGGCCGGAGTCCTCAGACAGCTTACGAGGGTACCGGAACTTTCCTGGCCTGCCAGGCACCAGCTCATTATCCAGCTCTCTCCTACCGCTGGATCCTCAACGAGTTCCCGAGCTTCGTCCAGCCCGACGGAGGCAGGTGGTTTGTCTCTCAGGTGACGGGAAACCTGTACCTGGCCAATGCCAGAACCAACGACACGGGCAACTACTTCTGCCTCACCACCATTAACATGGACATCAGCACCAAGAGCACCTTCAGCAAAGCCGTCCAGCTCACAGTGCAGCCTGAGGCTACCCCCAGGAAGTCGGCCCCGAACATCCGCGTGCGCTTCCCCTCAGAGACGTACGCGCTGGCTGGACACACCACCCAGCTGGAGTGTTTCGCCTACGGCAATCCTACACCGAAGCTGCGCTGGAGGAAGGTGGATGGGATCTTACCCTCGAAGGTGGGAGCGAGTGCAGATGGACCTATCCTGACCCTTCCTGACCTGAGCTTTGATGATGAGGGCGTGTATGAGTGTGAAGCCTACAGCTCAGAGGGACGGGATACACACCAGGGGCGCGTCTCTGTCCAAGctCAGCCCGAGTGGCTGCAGGTGATGAGTGATTCCGAGGTGGAGATCAGTTCCGAGCTGCACTGGAGTTGTGTAGCTGCAGGAAAACCACGACCGAGCATCCGCTGGCTACGCAACGGACTGCCTCTCAGCACACagGACCGCGTGGAGGTCACCAACGGCCTCCTGAAGATCAGTAACCTGGCCCTGGAGGATTCTGGGATGTACCAGTGTGTGGCGGAGAACAAGCACGGCACCATCTACTCTAATGCAGAGCTCAGGGTTCAAGTCCAGGCTCCTGATTTCAGGCTGAATCCGGTGAGGAAGCTGGTTCCGGCAGCCCGTGGCGGTCAGGTGAAGATGGAGTGTAAACCTCGAGCTGCTCCTAAACCCACGCTCTTCTGGAGCCGCGGCACTGAGCTCCTGACCAACAGCAGCAGGGTAACGGTCATGCCTGACGGGGTCCTGTGGATCTATAACATCAGCCGGGCCGATGAGGGGAAGTATACCTGCTTCGCGGAGAATTACCTGGGCAAAGCTAACAGCACCGGCCACCTGTCTGTCAGAGACGCCACCAAAATTACATTAGCACCCTCCAACGCCGACATCAACCAGGGAGAAAACGTCACGCTGCAGTGCCACGCCTCCCACGACCCAACCATGGACCTGACcttcacctggtccctcaacggAGTCCTGCTGGACCTGGAGGAACCAAACGGCCACTACCATCGCATAGAAGGGAAGGAAAATATTGGTGACCTCGCCATCGTGAACACTCAGCTGAGTCAAGCAGGCATCTACACATGCTCCGCCCAGACAGTAGTAGACAGTGCGGTAGCATCCGGCCGGCTGGTGGTGAGAGGTCCTCCGGGACCCCCTGGGGGTCTGGTGGTGAAGAGCGTGAACGAGACAGCGGTGGAGCTCAGATGGAGTCGTGGGTACGACAATCACAGCCCCATCGGGAAGTACGTCATCATGGGCCGCTCTGAGCACTCGCACGACTGGAAGAAGATGAGGACAGATCCTGCTAACATCGAGGGTAATGCTGAATCTGCTCGTGTGATTGACCTACGACCCTGGATGGACTACGAGTTCCAGGTCATTGCCAGCAACATTCTGGGCAGCGGAGAACCCAGCATGCCCTCCCAGCCGGTCCGGACCAAACAGGCAGCTCCTACAGTGGCACCCAGTGGTctgggtggaggaggaggagaccgCAACGAGCTCATCATTACTTGGACACCCATGGCACGGGAATATCAGAACGGAGACGGGTTCGGCTACATCCTGGCCTTCCGGAAGCTGGACGCTCCGGCGTGGACGGTGGTGCGTGTTCCCAGCGTAGAATCTTCCCGATACGTCTACACCAACCAGAGTCTCTCGCCTTACTGCCCCTTCGAGGTGAAAATCAAAGCATACAACCGGAAAGGTGAAGGCCCGTTCAGCCAGATCGCCGTGGTGCACTCTGCAGAGGAGGAGCCCACCGTGTCTCCACGCAAGATCAACGCCACAGCACTGACCGCCTTCGAGATCCTGGTGTCCTGGGAACCCGTCCAGCATTTAAGCACCAACGGAGTTCTCCGCGGATACGAGATCCGATACTGGCGGCAGCATGAGAGGGAAGCTGCAGCAGACCGGGTACGGACAGCAGGGCTGGAGAACACAGCGCGGGTTTCTGGGTTGAGACCCAACACCCTCTACCACGTCACTGTTCTGGCTTACAACAGCGCTGGCACTGGCCAACCCTCGCCACGGACCACCGTCATCACCAAGAAACCCCCCCCTAATCGACCTCCAGGGAACGTTTCATGGAAAACAGATGGTGCTTGGGTAACGCTCAGGTGGGATCACGTTAAATCCATGGACAACGAGTCTACAGTGCAGGGCTACAAAGTTCTCTACAAACACGAAGGACAGTCAGCTCTAAAAGTTCTGGACAAAGGCAAGACGTCAGTCAACCTCCCCCTGCCCAAAGACAATGGCTACGTGGTTCTAGAGATCCGCTCCTGGGGAGAAGGAGGTGATGGAGCAGCTCACGAGGTCATAGTATCCCGAGATTCAGGAACTGGAATGATGGTCCAGAACAACAGTGCCGGCGTCTCCAGACCCTCCCGCTCGTCAGCCCTGCTGTCTGCTGCAGCCGTCCTAACTATAATTGGCTTATTGTTACTGTGATGAGCCAGTGTTAAGGTCTGTCTGCCCCCCTCCTGTACCCCACAGATAGATATTGGCTGATTATCCTGTGCAGGAGGGGTGGGACTGCGGGGGCACTGGGGTATTTGATTGGGCAGGTCGGGGTGTGGgggctgttttattattttgtataaaaaaaggacattttttAATAAGGACTACTACTGGTCATTATTGTGGGATGTACGCAGGGCTGACTATGTGATTGTGTCGTAAAAACTTCGCCTTATAGGAAAATCAGCTCGTTTCTTGGTTTAAGTAGAAATGGGCGGTGATTTTTCGAATATTCGGTACCAAGTTCTTAAACCAAGTTTGTTTACATGCACTGAAAAAATCCTTTTAGAACTGGATTAAGAACAGTTATCTGTTCTATCTATTTAAGCAAACTGAAACTGATGGATTCAAATGATTTTCATCTTCTAGCTGATGCACTgaatcagtcaaaagtttagaagtttgttttttcattattaaaaattgttctctattgtagattaatactaaagtcgtc

Function

symbol description
cntn2 Acts upstream of or within nervous system development. Is expressed in cardiovascular system; nervous system; and trigeminal placode. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 5. Orthologous to human CNTN2 (contactin 2).

NR:

description
PREDICTED: contactin-2-like

GO:

id name namespace
GO:0001764 neuron migration biological_process
GO:0045773 positive regulation of axon extension biological_process
GO:0007417 central nervous system development biological_process

KEGG:

id description
K06760 CNTN2; contactin 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU261315 False 522 lncRNA 0.49 2 24069027 24069981
XM_022682684.1 True 3945 mRNA 0.55 24 24039246 24105898

Neighbor

gene id symbol gene type direction distance location
LOC103040944 LOC108425718 coding downstream 12201 24015546 ~ 24027045 (-)
LOC103040645 chia.2,chia.3,LOC108425699,LOC107555079,LOC107685745,LOC107727181,LOC107655977,LOC107727762 coding downstream 37298 23994623 ~ 24001948 (-)
LOC103040327 LOC108425717 coding downstream 51047 23980543 ~ 23988199 (-)
zc3h11a NA coding downstream 69079 23957828 ~ 23970167 (-)
LOC103046362 maf1,LOC108425756,LOC108254834,LOC107727190,LOC107685718,LOC107602775,LOC106583327 coding downstream 82909 23948531 ~ 23956337 (-)
nfasc nfasc coding upstream 41929 24147827 ~ 24283699 (-)
LOC103045744 NA coding upstream 668141 24774039 ~ 24800901 (-)
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding upstream 1129216 25235114 ~ 25354477 (-)
LOC103039085 NA coding upstream 1402590 25508488 ~ 25554687 (-)
LOC103038137 NA coding upstream 1421744 25527642 ~ 25537003 (-)
G192484 NA non-coding downstream 154708 23876635 ~ 23884538 (-)
G192439 dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776 non-coding downstream 432215 23602319 ~ 23607031 (-)
G192428 NA non-coding downstream 480070 23544535 ~ 23559176 (-)
G192365 NA non-coding downstream 709933 23329074 ~ 23329313 (-)
G192336 NA non-coding downstream 814643 23216176 ~ 23224603 (-)
G192589 NA non-coding upstream 154736 24260634 ~ 24262555 (-)
G192591 NA non-coding upstream 174476 24280374 ~ 24280691 (-)
G192597 NA non-coding upstream 194308 24300206 ~ 24352058 (-)
G192754 NA non-coding upstream 738657 24844555 ~ 24860400 (-)
G192757 NA non-coding upstream 799242 24905140 ~ 24905345 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 980441 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 1235604 22786163 ~ 22803642 (-)
amhr2 NA other downstream 1316341 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 1676788 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 2187604 21846969 ~ 21851642 (-)
G192815 mdm4 other upstream 1105777 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 1769012 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 2605355 26711253 ~ 26724106 (-)
G193097 NA other upstream 2925765 27031663 ~ 27033089 (-)
LOC111195340 NA other upstream 3284896 27390794 ~ 27391571 (-)

Expression


Co-expression Network