G72328


Basic Information

Item Value
gene id G72328
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5539952 ~ 5566228 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU82503
GTGTTTGTGCTGATGGAGCAGGTGTACACACCAGAGTCCTGCAGAGTGACTCTCTCCAGTTTGAGTGATGCGTTTCCTCCTGCCATCTCCTGGATGAACAGGCTGGTGCGGTTCACATAATGAGGATTCTGACGGTCGAGCTGGTCCCGACTGTAGTAGAAGCTGTGAGCAACGTCCAGCCCACGCTGCCAGGTGATAACGGTGCTACTCAGATCCCACAAGTCCACAGGGAAGGTGCAGGGGAGGATCAGCGCCTCTCCGTAAAACCCAGTGACAGGACCTCTGGGCACAGTAATCTCAAACTCAGCTAGAAAGGAGCTGGTCCCGACTGTAGTAGAAGCTGTGAGCAACGTCCAATCATTACTTGCTGTATGATTTTGTTGGCAGATCTTGACATGCCAAAATGATTTACAGAAAGCTGCATTCATGGTTGATGAGATGATTATTTCGCTAAGTATTTCACAACATTTCCTCTTCTAAAAATAAAAATACAAAAAAAAAAAAGATATATAAAATATATTTTCTGATATATTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU82503 True 575 lncRNA 0.44 2 5539952 5566228

Neighbor

gene id symbol gene type direction distance location
CI01000012_05414096_05416676 TTC9 coding downstream 123276 5413369 ~ 5416780 (-)
CI01000012_05131253_05139664 CNIH1, MGC85215, CNIH1.S coding downstream 400277 5131030 ~ 5139675 (-)
CI01000012_05118797_05123143 NA coding downstream 416809 5118332 ~ 5123143 (-)
CI01000012_05112839_05116264 NA coding downstream 423688 5111405 ~ 5116264 (-)
CI01000012_05091184_05092014 NA coding downstream 447938 5091021 ~ 5092014 (-)
CI01000012_05568600_05606181 NA coding upstream 2372 5568600 ~ 5606181 (-)
CI01000012_05609848_05631772 NA coding upstream 42605 5608833 ~ 5631932 (-)
CI01000012_05672517_05674075 NA coding upstream 106001 5672229 ~ 5675834 (-)
CI01000012_05680930_05690904 KCNK1B, KCNK1 coding upstream 113809 5680037 ~ 5690904 (-)
CI01000012_05738968_05745791 AGPAT4 coding upstream 172615 5738843 ~ 5745791 (-)
G72335 NA non-coding downstream 9057 5530441 ~ 5530895 (-)
G72334 NA non-coding downstream 13929 5525793 ~ 5526023 (-)
G72333 NA non-coding downstream 14268 5525369 ~ 5525684 (-)
G72332 NA non-coding downstream 14820 5524920 ~ 5525132 (-)
G72323 NA non-coding downstream 21796 5515612 ~ 5518156 (-)
G72338 NA non-coding upstream 9983 5576211 ~ 5576704 (-)
G72340 NA non-coding upstream 11574 5577802 ~ 5578006 (-)
G72342 NA non-coding upstream 12864 5579092 ~ 5579394 (-)
G72345 NA non-coding upstream 18047 5584275 ~ 5584521 (-)
G72349 NA non-coding upstream 22021 5588249 ~ 5588602 (-)
G72294 NA other downstream 74095 5462840 ~ 5465857 (-)
G72204 NA other downstream 237746 5293773 ~ 5302206 (-)
G72068 NA other downstream 759820 4776220 ~ 4780132 (-)
G71898 NA other downstream 1005280 4533530 ~ 4534672 (-)
G72629 NA other upstream 580783 6147011 ~ 6147494 (-)
CI01000012_07356934_07358497 NA other upstream 1789024 7356863 ~ 7358612 (-)
G74648 NA other upstream 2698101 8264329 ~ 8265654 (-)
G74701 NA other upstream 2800791 8367019 ~ 8367643 (-)
CI01000012_09068458_09070536 NA other upstream 3501678 9067906 ~ 9070765 (-)

Expression


Co-expression Network