G71548


Basic Information

Item Value
gene id G71548
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5550493 ~ 5561433 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU81545
AGCTGGTTTTGAGGAAAATTAGGTTGTAGCTGCTTGTCTACGATTGAAAAGAGGTGTTATTTGTGTACCAACAGCGTTTAGCTTACGAGTCTATTAATCTATCTATGAAAATCTATGAATATGCGGCCAACTTTACTTAAGTTAGTTACTAACACTGCATTGAACACCATTCATTTCAGTGTTTCTTAAAGGGGTGGTTCAGTGTTTTTTTTCTAGGCTTGACTGTGTTTATGGGGCGCAGTTTAACATGTCCTAATGCTTAGTTTAAAAAGAAAAAACGCTGTATTTTTCATATATATTTACATTTATTCTACACCGCTGTTTCCATTGTCATTTGAAAGGCTGGTTTGATCTATGATACCCCTCCCTCCGAAATATGCAATGGGCTCAGATCGGTTAGCTGGCCCAGTGTATTGTGATTCGCTGAAGCGTCCGGGAACGCCACGCCCCTTACCATTAGTTTTTACATGTGCTTCGGTGGAAATGTAAATAATGTAGTCTATATTGCCGTATGAAATTGACCTGAATCAGACCCAGATAGCAGTAAGGAAGAAGAGGGTCAAGCAGAACCTCTGCAAGCACGGTTTTTAAAGGACGTTTATGAATGAAACACATAACAATCCAAGAAGGAAGATCCTTTCCTGGACTAAAGAGATGCACCACATGCTGCAAGGAGTTCCTCTGCCCGTTCTGCAGTTCTGCTTTGTTTCACCCAACAAAGTGGAGCAAAGTGAAATCCCATTTGGAGAGCCATTTCAAACGCACAGTTCTCTATGAAGACCATCATATATGGCCTGGCTGGGCTGCAGAATTTCTCTGTGGGATGCTGAGAAGGCCTTCTTCTCTGGTCCGGATTATCATCACATTGAAGTGGAAGAAAAGAGAGCATCCATTGGAGTCAGTGAAGACGTCACTTAAGTTCTTTCTGTGTGGTTCACGTCACGAACAAATTTGTTTTTGTGTGTTCAACTGTTGTAATATATTATTTTATAAAATATACACAATCTTAAATATA
>TU81549
AGCTGGTTTTGAGGAAAATTAGGTTGTAGCTGCTTGTCTACGATTGAAAAGAGGTGTTATTTGTGTACCAACAGCGTTTAGCTTACGAGTCTATTAATCTATCTATGAAAATCTATGAATATGCGGCCAACTTTACTTAAGTTAGTTACTAACACTGCATTGAACACCATTCATTTCAGTGTTTCTTAAAGGGGTGGTTCAGTGTTTTTTTTCTAGGCTTGACTGTGTTTATGGGGCGCAGTTTAACATGTCCTAATGCTTAGTTTAAAAAGAAAAAACGCTGTATTTTTCATATATATTTACATTTATTCTACACCGCTGTTTCCATTGTCATTTGAAAGGCTGGTTTGATCTATGATACCCCTCCCTCCGAAATATGCAATGGGCTCAGATCGGTTAGCTGGCCCAGTGTATTGTGATTCGCTGAAGCGTCCGGGAACGCCACGCCCCTTACCATTAGTTTTTACATGTGCTTCGGTGGAAATGTAAATAATGTAGTCTATATTGCCGTATGAAATTGACCTGAATCAGACCCAGATAGCAGTAAGGAAGAAGAGGGTCAAGCAGAACCTCTGCAAGCACGGTTTTTAAAGGACGTTTATGAATGAAACACATAACAATCCAAGAAGGAAGATCCTTTCCTGGACTAAAGAGATGCACCACATGCTGCAAGGAGTTCCTCTGCCCGTTCTGCAGTTCTGCTTTGTTTCACCCAACAAAGTGGAGCAAAGTGAAATCCCATTTGGAGAGCCATTTCAAACGCACAGTTCTCTATGAAGACCATCATATATGGCCTGGCTGGGCTGCAGAATTTCTCTGTGGGATGCTGAGAAGGCCTTCTTCTCTGGTCCGGATTATCATCACATGAGTCAGTGAAGACGTCACTTAAGTTCTTTCTGTGTGGTTCACGTCACGAACAAATTTGTTTTTGTGTGTTCAACTGTTGTAATATATTATTTTATAAAATATACACAATCTTAAATATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81545 False 1015 TUCP 0.40 5 5550493 5561433
TU81549 True 986 lncRNA 0.40 4 5550493 5561433

Neighbor

gene id symbol gene type direction distance location
CI01000012_05523886_05527548 NA coding upstream 22332 5523886 ~ 5528161 (+)
CI01000012_05495596_05510317 NA coding upstream 39521 5495357 ~ 5510972 (+)
CI01000012_05425849_05469157 PCNX, PCNX1 coding upstream 81336 5425849 ~ 5469157 (+)
CI01000012_05419501_05424708 MED6 coding upstream 125667 5419501 ~ 5424826 (+)
CI01000012_05390382_05407802 MAP3K9 coding upstream 142349 5390014 ~ 5408144 (+)
CI01000012_05565127_05567009 NA coding downstream 3506 5564939 ~ 5567230 (+)
CI01000012_05648602_05650699 MYCLA coding downstream 87169 5648602 ~ 5651197 (+)
CI01000012_05659039_05669397 NA coding downstream 97606 5659039 ~ 5669584 (+)
CI01000012_05708007_05735678 MAP3K4 coding downstream 146574 5708007 ~ 5735985 (+)
CI01000012_05748899_05754466 ERLEC1 coding downstream 187466 5748899 ~ 5755254 (+)
G71225 NA non-coding upstream 138977 5409222 ~ 5411516 (+)
G71171 NA non-coding upstream 244920 5304404 ~ 5305573 (+)
G71529 NA non-coding upstream 388060 5161509 ~ 5162433 (+)
G71172 NA non-coding upstream 410525 5137470 ~ 5139968 (+)
G71523 NA non-coding upstream 516226 5034028 ~ 5034267 (+)
G71559 NA non-coding downstream 11384 5572817 ~ 5573228 (+)
G71562 NA non-coding downstream 47417 5608850 ~ 5611605 (+)
G71599 NA non-coding downstream 75935 5637368 ~ 5637671 (+)
G71606 NA non-coding downstream 110321 5671754 ~ 5672210 (+)
G71607 NA non-coding downstream 111609 5673042 ~ 5673257 (+)
G71221 NA other upstream 10037 5538525 ~ 5540456 (+)
G71218 NA other upstream 12109 5535852 ~ 5538384 (+)
G71199 NA other upstream 133708 5413250 ~ 5416785 (+)
CI01000012_05177587_05180517 SRSF5A other upstream 369523 5176895 ~ 5180970 (+)
CI01000012_04495631_04501066 NA other upstream 1050404 4495631 ~ 4501066 (+)
G71623 NA other downstream 252084 5813517 ~ 5816605 (+)
CI01000012_05923216_05928055 SRD5A2B other downstream 361733 5922385 ~ 5929186 (+)
CI01000012_07806089_07811902 BEND3 other downstream 2244670 7805248 ~ 7811902 (+)
G73578 NA other downstream 2805373 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 4660522 10223697 ~ 10236276 (+)

Expression


Co-expression Network