G192815 (mdm4)


Basic Information

Item Value
gene id G192815
gene name mdm4
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 25211675 ~ 25217550 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU261664
gcactatttatttttaactaaaaatacacaaacGCTGCTCATAAGCAGGAACCAAAGTCTGCAGCAGAACTCGGCTCTGAGGAAAACcaacaaaatgtacaaatataaaCTTCAATAATTATGGCAGTGACTTTAGCACAAACAAGTCCGCTTAAATGTTGAATACCATACGGCGTATCACAGGGTAAATACAGCAGTCGCACCCATgcaagattttctttttttttttgccattacaGGATTCAAAATTGAGGACTCAAATAGGAGGTTATTATATAGCTAATATAGCCTTTAGACCTCCACAATACAGTGGCATACAAAGTTTGGCTGCATTTCTGGTAATTTCTGTGAATAGTTCAggtaagaatatatatatatatatatatatataaaaaaaatcaagataaaGATCGAGTCTTTCCTCTTCAGTACAAATTTTTAGACTTACAGAGATTTGATTCTCAaccttgtttggtctggacctTCAAACTTTTTACGTTTGttcctaaagaaaaaaaaaaggcaaatgtaGAAAGTGCCTCGGAACAAGGTATCAAAAGAGTGGCTCAGATCAGAATCAACTAAACTATGGTTCGGtttgtttacagtgtgaaatctttaacttattataaaaaatagttaatctacagttacagaagATACAGCATATCAGCAAAACCTgctgtacccatactgctgtgAGACGTGCCTGCACAGCAAGAGGagtcagatttcagcacaacactgcttctttttcttcgtCTATTGTTTAACATGTGACAATACCGTGCCTTGACTTCCTATAATTGATCTAAAAGTTATTTTGAAATTTTCACACGGCAAACAAATAGAATCGTGGGTTAGTTGATGcacactgctactactacttgtTTAGTTTGGAGTCTGAAGCAAATAAGGTCGGTGTAAGAGCATCCTAACAAACGCTAACACATTGCAAGaaaggcaaaaaaatatatatatttgactgATAAAGACAATCAAAATGATTTAGCAGATTTAGACTTCTTCCATTAGTCACTTCACTATTCACAGTTAAAAGAAATTTCTaaacttttgcatgtcacaccaCATATCTCATAtctctcattcacacacactctcactctcatacTTATAACTAGAGATGAAATCAGTCTACACTTCCACAGTTATTAATATAAAGTGTTAAGTACTGGCGTTGTATTTCTCATTTACACACATAGAGAAATGTACAGTTTAACCCCGATGGTTATACTGGGGATATCTGCACACAGTCCTCCATTACTCTGCTTTTGCCATCGAGGACGATCGTGCTGAGCAATTAAAATGAAGAGTTCTGAAGAGGCAGAGCACACAAATTAGGCAGTTTTAAATAAACGGCAAACAGAGAACAAGTGGAGCAACAGATGGGCGAACAAGCAATCGTAGCGACGGATCCGTTTAAGAACTGAGAACACAAACTGCAAGGATCAGCTGGCGTAAAACACGCATAAACTTAACAATTAGAACCAAATGAAGAAGTGCTGAAatgttattttgtcttttttatatgtttttcacggtaccactttaaaataagactacctctatgaaggggttataaatggtttacaattagtttattaatggtttctagttaggttgtaaatgccttaatgcattaataatcagttataacgcatacgtagaaagggcaacaatgacctgttgtttggtCAAATAGTGAACTTagtcatctatattgttgccctttctatgtatgtgttgtaactgattattactgatttttgaggcatttacaacctaattagtaaccaataataaactaattgtaaaccatttaaaaccccTTTATacaggtagtcttattttaaagtggtacctgtTTTTTTACACAGCAGCATCAGATTAGtctcaaatcaaatgtattcaAATGTGAAAAGAATATTTGCAAACATTATTTGTGGCATAACTTTAAATTGGAAGATCTTGTGTTTAAACTGACTAACTTAATTTTCTaagttatttaaacaaaatatcttatttatatttattttaactccatttTCCAGTGTTTCTTAAATCTGGTCCTTATGGTACCCTACCCTACACATTTGAGGCTGTGTTAAGAGTGAAACCAAATTGGATCCTGGTTTCTTAAATCAGATCTATTGAGATGGCAGTCTACACTGTTACTAGCAATTGGTCAGATAGGATTTGCCTGGACATCACAAGCGAAATGTGTCTGCATGGGCTGTTGTGATATCAAGGTTGGTGTCTTCTGGACTGAGGTGCAGCCATATTGGATTTgatgtggtttctggctgtccaaaccatcaaaaaataataataattaaaattaaaaaatgtgggCACAATCTAGATCAAGGTGCGTAATTTGGATTTAAACGGGCAGTCTGAACCTAGCCACCCTAGTTTTTCTCCAAAAAGCTTGCTTATAATTACAGTCGTAAATCATCtatatagctaaaaaaaaaaaacgtcacaCAACATTTTATAATCGAGACTGTAACAAGTGGAATACCatgaaatagaaaaaagagGAATTCAACATTGAGGAAGAGCTATAGCGAAAGGCAcagagtaataataataacagctaaAGGAAAGGCAGGGTAGACCCAAATTGAGTCCGATGGCTCCTGTGCACCACGTTCACGCCTCAGTGGTGCTCAGGCCCACCCAGTACTGGAGCTGAAAAGATGGCGATGGCTAAAAGGAAGTGAGCAGTGAAGCAGCAGAGGAACATCAATAACCACACGGCAGCTCTCGGCCTGTTCAATCTGAAAAGTGCAGAAATCTGGCAAAGTAGGCATGCGCCACTCATCTCATCCCGGCACTTTTGAGTGCAGGCTGTAGCCTGTAGAGGTGTTACAGTccacatatataataataataataataataacaacattaacattaataataccACTGGTTCATGTAAGATGATCACAGACATTGAGAAGTTATAGACTTTTAGAGACAGTAAGCTGTATGAAGTGCTACTTTCCACATTTTACAAACAGTGTACGCACCAGTTAGACTGTAGCTGCATCCCAAAACTAAATCTAATCTAGGCTGCAGATGAGATAGGCTGTAAGGTCAGAGAAAGCAGATTCATAATTAAGAGTTCTGTGTATTAGGGACACGGTGTAAAAACctctgatatacagctctgaaaaaaaagaaaagaaaccacttcatgatgagtttccttgattttaccaaattgaaatcctctggaatataatcaagagaaagatggatgatcacaagccatcaaaccaaactgaactgcttgaatgaatttttgcaccaggagtgcaggcataaagttatccaaaagcagtgtgtaagactggcggaggagaacatgccaagatgcatgaaaactgtgattaaatacagggttattccaccaaatattgatttctgaactcttaaaacttaatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcatttagtgttttagtgcgttttagttatttcatctatttctcattttctgcaaaaaaaaaaaatgctctaaatgacaatattcttatttggaatttgggagaaatgttgtctgtagtttatagaacaaaacaatgttcattttactcaaacatatacctataaatagcaaaatAAAGGTAGGTAATGTGATTTGAGTGAGCTGCTTTTTAAGGTGTTATCACAGCTATTTTGATGAGCTTAAACTCATATTACAATACCGATATAAATAATAACTTATCGTACAGACCTACTGTGCATGCAGCCAATATTCTGTGCACCTTTTATGGCGctactgatgtatccttccagcTTATAATCAGTTAGCTACAAGTGTCAATGCTATATGAACGCTAGATGAAAATCTAAAGCATACTACTTTTGCACCACGACTGTAACACACCTGGCCTTTCTTGTGATGTCACCATGAAGTGCTTTTAGACTGTTCCACGTGTGACCAATAAGACACATTAGGACGGCCTTACCAAGGACCTGCCCTACCTCGACCGCAGCCTAGGTTTTGGAACACAGCAAGAGTCTATAAATGAACGACAACTTATGACTACCCTCTGTAAAAACATACCAAACATAATGGTGGTCCAGCCTTATAACCTTATAATGTGCTGATCTGGTTAACACAAACCGAACAATCCCCTGAACTGGTAAactatgttaataaataaataaattatacacaATTAGTTACTGCAATCACCTAAGATCCCTCCATTTCACATGAACACTGTTTCCCCAATAGTGTGAAGAACTCAGAACTGCCTGTACTCTGGAAAAGGAATTTGGAAATCTAACGCTGGTTAAGCTCTTGCAAACATGCAaccaaaacaaaatgaaaaagcaTGTTTTAGCCTTTTCTTTTCATGGTGATCAACAGCTCATGTCTTGAGACTTCAAGTAATCAAGTAGTACCAACCTGTATATGAGttagggatgcaccgaataTTTGTCCATGAAAATATTAAGCCGAAAATGCttcatttaaattgtattttctttaaaaagcaagacaaaaacatttttgctaCAACACTACTTatgtgattgtaaaaaaaaaaaaaaggcaaaattaaagaaacctaacagaaaaaaagaaaaaaaaaaagtgataggTATACAGCCTTCATCCAAATGCTTaattttaatcagtttaataaaaaaatatctttattttggtgcatccctaactAACACAAGCATCTTGGATCTGTCATATTTTTCTTTGATATGAAAACAATcaaaaaacatattaagaaaaaaaattaattggtgCATCCCCAAAATGTTCTGGAGCTCTGCACCTCCTTCAACGAACACAAGCACCTTTTTCTTCGCTATACATGCTGTGCTTGCAACTATAAATGCCAAATATAGCAATAATAAGGCAAAGTTCCATGTTTTAGAACACAAAACTGCCGTTAAACTGCCGTTAAAAGTTGTTTTAGGTTCGTTATTTCATTGCATTAACCATgcctttaaacacatttttttttttggcccaaggATTTAAGGATTTTCACAACTgctcagatattaaatatttacagcatagATAGAATCTCTGTACACTCTGTACACAAGTGCGCACACGCGAATGTGTGGTTCACATACAAACCATTACCGAACTCCCTGCCCAAACTTGTCAGGCTACGAAGATCTTAATGACTTTCTGGATGATCTGGCCACACCCCGGGCAGGGGGCGTTGAACTTGTGCAGCTTGCGAGCGCAGGGGAAGCAGGTGATCATGTGGGCGGTGCGGCCGTGGATGATGTTGCCGTTGCGGGGTCGGACCCGGCACAGCTTGCACGGCTCCAGCATCGCCTCCTTTCGGCACTGCGTCTCGCCGTCCAGCAGGTCCTGGCTCTCCCCCTCTGAGCTGTCCTGGGAGCTCTGCAGGGGCCGGCAGGGGTTCTTCCCCTTGGTGGAGGAAACGGGTGGGTTGCGGCTGGCCTTGTGGGAGGGGAGGATGATGGGATCAGACACGGTCCTCAGGCAGTCGGGCACGTCGATGCCGTCGTCCTCGTCTTCGTCTTCAGGGCCCTGCGGGAGAGAGCTGCAGGCGGGGATGTCCGGGACAGAGATGGAATGGACCAGGCGGGGGCAGTCTTTATACCAGTCCTTGCGCAGGGCCCAGCAACGCATGCAGTATCGCTGCAGGGGAGAGTTGAACTTCCGACACTCCCCACACTGCCATGC

Function

symbol description
mdm4 Predicted to enable p53 binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of apoptotic process and regulation of cell cycle. Predicted to be active in nucleus. Orthologous to human MDM4 (MDM4 regulator of p53).

NR:

description
protein Mdm4 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261664 True 5770 TUCP 0.38 2 25211675 25217550

Neighbor

gene id symbol gene type direction distance location
LOC103045744 NA coding downstream 410774 24774039 ~ 24800901 (-)
nfasc nfasc coding downstream 927976 24147827 ~ 24283699 (-)
LOC103040944 LOC108425718 coding downstream 1184630 24015546 ~ 24027045 (-)
LOC103040645 chia.2,chia.3,LOC108425699,LOC107555079,LOC107685745,LOC107727181,LOC107655977,LOC107727762 coding downstream 1209727 23994623 ~ 24001948 (-)
LOC103040327 LOC108425717 coding downstream 1223476 23980543 ~ 23988199 (-)
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding upstream 17564 25235114 ~ 25354477 (-)
LOC103039085 NA coding upstream 290938 25508488 ~ 25554687 (-)
LOC103038137 NA coding upstream 310092 25527642 ~ 25537003 (-)
ppfia4 ppfia4 coding upstream 370176 25587726 ~ 25770719 (-)
LOC103036054 mdfi,LOC103036054,LOC107548515,LOC107675846,LOC107728619 coding upstream 791246 26008796 ~ 26085478 (-)
G192806 NA non-coding downstream 19615 25190093 ~ 25192060 (-)
G192763 NA non-coding downstream 247885 24962509 ~ 24963790 (-)
G192758 NA non-coding downstream 301646 24909809 ~ 24910029 (-)
G192757 NA non-coding downstream 306330 24905140 ~ 24905345 (-)
G192754 NA non-coding downstream 351275 24844555 ~ 24860400 (-)
G192821 NA non-coding upstream 45489 25263039 ~ 25263994 (-)
G192822 NA non-coding upstream 144981 25362531 ~ 25362736 (-)
G192869 NA non-coding upstream 233718 25451268 ~ 25451654 (-)
G192871 NA non-coding upstream 240863 25458413 ~ 25458628 (-)
G192887 NA non-coding upstream 284953 25502503 ~ 25503530 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 1105777 24039246 ~ 24105898 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 2152870 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 2408033 22786163 ~ 22803642 (-)
amhr2 NA other downstream 2488770 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 2849217 22349347 ~ 22362458 (-)
LOC111195415 tfeb other upstream 657360 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 1493703 26711253 ~ 26724106 (-)
G193097 NA other upstream 1814113 27031663 ~ 27033089 (-)
LOC111195340 NA other upstream 2173244 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 2207492 27425042 ~ 27701331 (-)

Expression


Co-expression Network