G192887


Basic Information

Item Value
gene id G192887
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 25502503 ~ 25503530 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU261751
tttttgtcagagatATATAAAGAAGATCACATCGGATTGTAATAAATTTAACTGATTGATCAGATTTCGATGCGTCCTCACAACACTGTATCCCATTCACACCTTTACTTGGTGCTGGACACTTATGATCAGATGTTCGACTCACCCAGAGTGCATGTTTAGGCCAGGTGTGAACAGAGCCATAGAGTATACCAGCCGCAGAGATAGAACAGTGCATTTAGTCTCtctttttggcaaaaaaaagttaatttaataagattttaagattttgttCCAAGTAATTATGGACCGATTCTGTTGGTCTGCGCATCATTAATACATAAATGACAGTTTTTTCTTGCGCTATATTGTTGACATGCTTGTGTATAGTCATGTTTTAGCAGTAAATATATTGTAGAATATTAAAACTTTCAGTGTATGAGTTCAGTATTGTTTATCTCAACTGCAAATTAAAGTTAGATGGTTGACTACAAACAGTAGTTTTGCACAGTTGtggaatttaatatttttattagactGTTATATATTGCTATTCTTATGTCTTACAACCATAATTGCATGTTATTTTTATAAGTAAAGGTTATAATGGCGCAGAGGGGTCCAGCGTTCTAAAGTGCAGCCACtttgattgggagatcgctggttcgaatcccagtcatgcagcttgccatcagctgctctctctgggtgggtagatgttgCTTTTTCCCCTTATTACACCCAgggtgatgtcagtcagcacaaggcgtccTTCCAATTGAAATGTCTGAGCAGTTATTGCTGTTTTGTTAACTACAAATTTCTTCTTTACTTTGTATTTGTCAGTAGATAAATACACTTAATGAATaagtgcatttttaaataaaatctgcaataaCTGTTGAATATTGTTGTAAATGTTTAGTTTCAGAAGCAACCTAAAGAAATGTGTGATCtttgaaagttaaaaagttatttattctgttctgcatttcatattttcatttgcatatttttgtttcattcatgctttttcacaaaaaagtggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261751 True 1028 lncRNA 0.34 1 25502503 25503530

Neighbor

gene id symbol gene type direction distance location
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding downstream 148026 25235114 ~ 25354477 (-)
LOC103045744 NA coding downstream 701602 24774039 ~ 24800901 (-)
nfasc nfasc coding downstream 1218804 24147827 ~ 24283699 (-)
LOC103040944 LOC108425718 coding downstream 1475458 24015546 ~ 24027045 (-)
LOC103040645 chia.2,chia.3,LOC108425699,LOC107555079,LOC107685745,LOC107727181,LOC107655977,LOC107727762 coding downstream 1500555 23994623 ~ 24001948 (-)
LOC103039085 NA coding upstream 4958 25508488 ~ 25554687 (-)
LOC103038137 NA coding upstream 24112 25527642 ~ 25537003 (-)
ppfia4 ppfia4 coding upstream 84196 25587726 ~ 25770719 (-)
LOC103036054 mdfi,LOC103036054,LOC107548515,LOC107675846,LOC107728619 coding upstream 505266 26008796 ~ 26085478 (-)
LOC103035733 foxp4,LOC107739274,LOC107728618 coding upstream 610907 26114437 ~ 26349705 (-)
G192871 NA non-coding downstream 43875 25458413 ~ 25458628 (-)
G192869 NA non-coding downstream 50849 25451268 ~ 25451654 (-)
G192822 NA non-coding downstream 139767 25362531 ~ 25362736 (-)
G192821 NA non-coding downstream 238509 25263039 ~ 25263994 (-)
G192806 NA non-coding downstream 310443 25190093 ~ 25192060 (-)
LOC111195414 NA non-coding upstream 36492 25540022 ~ 25542358 (-)
G192892 NA non-coding upstream 75333 25578863 ~ 25580309 (-)
G192944 tmem183a,LOC107656009,LOC107727871,LOC107739272 non-coding upstream 271867 25775397 ~ 25779194 (-)
G192947 NA non-coding upstream 278852 25782382 ~ 25785455 (-)
G192951 NA non-coding upstream 305538 25809068 ~ 25818951 (-)
G192815 mdm4 other downstream 284953 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 1396605 24039246 ~ 24105898 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 2443698 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 2698861 22786163 ~ 22803642 (-)
amhr2 NA other downstream 2779598 22709549 ~ 22722905 (-)
LOC111195415 tfeb other upstream 371380 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 1207723 26711253 ~ 26724106 (-)
G193097 NA other upstream 1528133 27031663 ~ 27033089 (-)
LOC111195340 NA other upstream 1887264 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 1921512 27425042 ~ 27701331 (-)

Expression


Co-expression Network