G192947


Basic Information

Item Value
gene id G192947
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 25782382 ~ 25785455 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU261823
ATGCATAaggacaaacaaataaatagcattgctaaatttaaaataattcaacTTCTTAAACAccacaataatataattaaaacacacaaaattcaGACTCAACCCTTAAGCTCCATACCTTTAAAATcattctgaattaaaacaatttcctcttttttttattataaaatgattgTTTTGCACGTGTTCAgcttaatttaactttaatttgtAATCAGAGCACAATACCATCACCAACCGACACGTATCCCAATACACAGACTTTTTAGATCAATTATACATAAAGGCTGTATTCAGACTCCAGACAAACTGGATTTGTTCCTCAGATCAGATCTATTGAAATTAATGACTGCATTGCCATCATTCTGGATTTGATGTGAGggacgagaaaaaaaaaaaatctaaaatctgatTCCAGCAACCTGACCAAGTCCATCTCTTTTCACACAAGCTTTTTTTTCCACCCCAGACATTCAGTCAAGGGCAAAAGCTATTCCTTTTTTgtccaataaaaataataaataatagaaagcAGCCACCAGCTGAAGCGTATGTGAAactacacacagaaaacagaaaagtgaCATATAGGAAGGTAAATCTGTACAAATACAATTGTAATCGCATTTCAAACCAATTCCAAATGAGGTCTGGATCAGATTTGCTAAAATCGGATTTGCGCTGACAGTCTGAATACAGCCAAAATGAATCAAACATTTTCTGATTTACAtatcatttgtgtgtgtgtgtgtgtatgggtgcatgtgtgttacatatattacaaaTCAGCCATTATCAACAGAGCCTGACCAGAGCAGTGGATTAAACTAGGACGACACAAGAATGAAAAAGTACACGCAAAGAGACTATGTTGCTTCCTCatcctgcgttcacactggcaaGTCTCTTGTGGGTGTGTTCAATGATGTTTGCGCATTGTGAGTGGGTGTGTATCACTTTAGCTGGTTAGCATGCCAgcaatcttcctcttgagccATCTTCTACTTGCTTCCAAGCTTTATTTGTCTCCAAAGTGCCTCTGTATTTGTGCAATGCTTCATATAAAACAAATGGCAAAAACTGTTAGCGGTTAGCGATCATTAGCCTCTCTGTCGTGTTCAGAACAGTTCACCCTGCTGCGATTATGAACGAAGTACGGTAGGAATCTAAAGTTCACAAAGCACAAGGTGGAAACCTCGGATCCCCTTGTTTGTGATTGTTTCAAAGAATTTGCCTGGTTAATCGGTGTAAAATGTTGCTTCGCCGCATCACAATCTCAACCCCTGTTATCACTTGTCACTCTGTAGCTTGAAAACGAAGCTTGGGTAAAAGTAGCAGGCATTGTTGATGTTTCTGGTGGGTTGGTAGCCTGTTAGACAGCTTACTagattagccagcatgctaaccagCCATACAGATACACGCAAAAAAGGACAACAGCCCAAACacgcccaaaaaaaaaaaaaaaaaaaaaacacacacagaggtaGCAGTCACTGTTGGGGTCTGTTGTGTTGGTAGCCTGTTAAGTAGCTTACTAGattagctagcatgctaaccaGCCACGCAAAAGTGCAAAGCAAATggccacaaaacacacacacaagaaacaAACTTGAGGCAACGTCAGCAACTTGCCAGAGCGAAGATTATGTGTGGACGGAAGTAGCAGACATTGTTGGGGTCTCTGTTGGGATGGAAGCCTGTTAACCTGTTAAAATGCTTTGTCCCATATACAGGCTAGAGGTGTAGGTGagacaaaacccttttttctgcagtaaaataacttctGTTCAAAGCCCTCAGATTTACAGAATGTAATGTAAGAACATGACTCCTACAGGACTCTTGGGCTGGacgctgcctgttttctctttaCTCCACttataataattccagatcagtaacaggaatcaccccaaattctgcatggttgaaaagagacaaaaactagacaaacctAACAAATCTAATGTCCTTTGTAGGACATTagctgtttgatttgtattcaggaaaagagccaattttattattttaatcattatattGTGACATTAGAAGATTTACTTGACTCATTTTCTatactttctattacaattacaattataattttcagtaatgttccttacccaacatgaaagcttttttatgtaatgcttaaatagaaatcctcaagatttagtggtgtaatgtcaggcagactattgacaaaaatcctggcttCATAATTAAGTATCTTACTagattagccagcatgctaaccagCCATGCCAATACACGAAAAATGGCAACTgccacaaacacacccacaaaaGACAAATCAGGGACAATGTCAGCAACTTGTCAGCTGCCAGCGTGAACGCAGGGTTACACCTCctcattttaatgttacaaaCCAGCTCTCTACATATAGAGATGCTTAAAGTTGCCCTTCTTGGTGTGAAAGCATTAAAGCCTACAGCAACTTCAACCCAATGACCACAAAAAGGACAGAACTCAAAAGGTCTGTTTCCACCTGCTATGATAGCTCTACTGCATAACACAAGTATGCCACAAAGccaataaagaaaagaaagaaaaaataaagaagaaaaaagatctGAGGAAGGACAGGACAGTGCAGGATGACTCATAGTAGAAGCAGGCCTTAACTCTTTATTCACTACACACATTGTGGTTGTGCGTGGATCGATGGCAGGGCTGTAATCTAAGTGTATGAGATTGTGGGGTACTGAGGGTCCCACCAGTCCATGAGACGAACACTGTGGACGGGGTCCAGCACCACCTGGATGCCCTGCTCCCCTCGTAACTTCTTGCCCCGGACAACGGGGGAGTCCTGGAACTCCAGCCGTACCCGGTGGTGCCTCATATCTGTGCTCACGTTAATGTTGAACTGCAAGACAAGAAAAGATGGATTCAGGTTAGTTTACGTGTTATTGATTAGGATTATCAGCATTGGGTTGTGTTAGGAATCAAGAGATATGCTGAATCACTACGAAAATTAAAGGCTCAAACGATAaagggctggacgatatgggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261823 True 3040 lncRNA 0.40 2 25782382 25785455

Neighbor

gene id symbol gene type direction distance location
ppfia4 ppfia4 coding downstream 11663 25587726 ~ 25770719 (-)
LOC103039085 NA coding downstream 227695 25508488 ~ 25554687 (-)
LOC103038137 NA coding downstream 245379 25527642 ~ 25537003 (-)
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding downstream 427905 25235114 ~ 25354477 (-)
LOC103045744 NA coding downstream 981481 24774039 ~ 24800901 (-)
LOC103036054 mdfi,LOC103036054,LOC107548515,LOC107675846,LOC107728619 coding upstream 223341 26008796 ~ 26085478 (-)
LOC103035733 foxp4,LOC107739274,LOC107728618 coding upstream 328982 26114437 ~ 26349705 (-)
il10 NA coding upstream 1343697 27129152 ~ 27133856 (-)
LOC103047370 NA coding upstream 1362259 27147714 ~ 27153326 (-)
prelp prelp coding upstream 1377292 27162747 ~ 27170995 (-)
G192944 tmem183a,LOC107656009,LOC107727871,LOC107739272 non-coding downstream 3188 25775397 ~ 25779194 (-)
G192892 NA non-coding downstream 202073 25578863 ~ 25580309 (-)
LOC111195414 NA non-coding downstream 240024 25540022 ~ 25542358 (-)
G192887 NA non-coding downstream 278852 25502503 ~ 25503530 (-)
G192871 NA non-coding downstream 323754 25458413 ~ 25458628 (-)
G192951 NA non-coding upstream 23613 25809068 ~ 25818951 (-)
G192952 NA non-coding upstream 33753 25819208 ~ 25825956 (-)
G192955 tfeb non-coding upstream 69210 25854665 ~ 25858416 (-)
G192956 NA non-coding upstream 70928 25856383 ~ 25857155 (-)
G193005 NA non-coding upstream 442153 26227608 ~ 26297229 (-)
G192815 mdm4 other downstream 564832 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 1676484 24039246 ~ 24105898 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 2723577 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 2978740 22786163 ~ 22803642 (-)
amhr2 NA other downstream 3059477 22709549 ~ 22722905 (-)
LOC111195415 tfeb other upstream 89455 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 925798 26711253 ~ 26724106 (-)
G193097 NA other upstream 1246208 27031663 ~ 27033089 (-)
LOC111195340 NA other upstream 1605339 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 1639587 27425042 ~ 27701331 (-)

Expression


Co-expression Network