fam72a (fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824)


Basic Information

Item Value
gene id fam72a
gene name fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 26711253 ~ 26724106 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU261939
ttttacagtttggATTTGAAGGTATGTTTTAAGGTCACACTGCAGTACTGCAGTCACatcatttcacatttttaatttatatttttttttaaatctgcagTGAATGAATTGGCTTGCATTTTAAAGATTGCTGATATTGGTTGATGTCACTTAAATACaggtttttactgtattttactgttaCTGCAGtctgtacatactgtatactgtttatacaacttttttttgtttctcttccgAACAGCCAATCAaggtctaaaataataataatgtttaaagaGCGTGCACAAGCTGAGCAGTTCTTTCCAAAGAttagtttattttcttgtaGTTTTCTGAGAACACTGTGGCTCTCCTGAGAATGACAAAATGGAACATGCAGCACAGCAAACGTGAACCATTTGagctttttcctgtttttttattttttttattattatt
>TU261941
gattgattgattgattgattgtgcaCCATCTCAAAATGTAactcattttacattatttatttaggatatttaaactaaatattgGCACAGTTATCATTGAATTTAACTTTGGTAAGCACAACAAAAAACTGTAACACACTGATGTTAATTAGCTTGCTAAGTTGTGTAGCAATTATTTTCTGGCTTGAATgattttcattaatatattgaCCAAAATGAAAAGATAGgagttattttttaaacttgacAGAAGTTGTTTATTTGCTGTAATTTATCAACATTttgaatgtatgtatttattaacgAACGTGATGCTGTATTTATACTCGGATGATGATACTCTGATTCTCTTGCACCGTTGGAAAACTGAAAGAGTTTGTATTTCTTTGAATTTGCACTGGAAATGTGTTCCTGGTTTGAACGTTGGGTTGTTTTGTACGCTTGCTGTcttgatattaaacattttttaaaatgtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatata
>XM_007247751.3
TAAAGGGGCTTTATGGGGACGTAAACAAACGTAGCTAGCTTAGCGAGCCGAGCGTTTAACACCGCGGCGGGTTAATAAGAGCTCAAACTGAGCTTTTTACTGCTCGTTTGTCTCGTATACCCGCGTTTACCCGTTTAAAACCCATAATATGTATAGTTAGGGCTGTCGTACAGCCTTAAAATACGAATTAAGAACAGCTgctagctaggtagctagcattagcttggTTAACTACTCGGCTAACATCCTGTTTAAATAGCGCACAGATCGTAGTTAGCTGAGCAGTTTAACGCTAGCTGCTTAAGTTGGCTAGTTAGCACTAGCTGCCTAAGCTTTGATGCGAGTTCCTCGGTTAGATTTTGTAATAAATTCACTTTACTAGCTATtaaattagctagttaactattGAGTCAATAATTCGTTTCAGCTACTCTATATACTAGCTAGTCAATATTACAGGTCAGACTGGTaacgctaggttagctagttaactaaccAAGTGTTTCACCGCATACGAGGCAGCACAATGTCTACTTctaattttaagaataaatgCGTTACACAGGTGAACTGCATTTACTGCGACAGTCTCCTCTGTACGAGAGGAATGAAAGCTGTGCTTCTAGCTGATACAGAGATCGAGCTGTTTTCAACAGACATGCCACCAAACAGGACGGTTGACTTTGTTGCAGGCTGCTATTCCACAGACAGCTGCAAGTGCAAGTTAAGAGACATCGCCTGTTTGAaatgTGGAAATGTAGTGGGTTATCATGTGGTGGCTCCATGCAAGCCCTGCCTCCTCTCCTGTAACAATGGACACTTCTGGATGTTCAATAGTGAAGCTGTGTCCACCATCAACCGACTGGATTCATCAGGACAGAATCTGCTGCTGTGGGGTGATCTGCCCGAGTTGGAGGGCAGCGAGGATGAGAGCCCAGGCAGCCTTTCAGACGAGGAGTACCTCAGATAAAGAGACAGAGGTACCAAATGCACTGGAGGTATCGGACTGTACCACACTGAATTTTTTGGGAGGGGCTTAACTCCCAGAAGCCTTTGTTTTAAGCACATTCTTTCAAAGACTGGAGAGAAAATAAGACTGCAAAGAGAAAAGACAACACAAGACATTCCAGCACATGTTCAATTGATCTGTCTTATGATCGCACCCTCAGCAGCGGTTTGGTAGCATCACATTACGCATTTCAGTATATTTAGTttgttattatattgttatactTTTGGTGTTAGGGTATGTAATTTGTGAAATGCGTAAAGCATTCTGAACTGCGAGCATTTTGAGGTCACTTGATTGGCACTGATTGGCATGTgaccaatatacagtatataacccTAACATGAGTATATGAGTCTAGCATATAagctgatcagccataacattaaaaccgcCAGTGTAGGGTCCGAGATAATGCACAACTAGAGCATGGATTATGCACTTGTCCTCACCCTGTCCTTGTGAAGGGAGCATTGAAAGAACATTGGAGGAGACCTGATGACTGGTGAGTGGGTGGGTTAACAATTAGGTCAGATAAATTGTATGGAAAATGATGTAGTATttatgtagtaaaaataaataaatatttaaaaacaccaaaaatagcTCTCCCTCATGACTTCAACCGATTTTTCTTCACCCATCAGTGGTtataatgttgtggctgatcaGTGTACATGTATTCTGGAGGGTGgccaataataaaacaaaaaagaaaatattgagatttatttattgggaaattaaacaagcaaacaagTGATGGGGCTTATATGTACTTCTTTAAAACTGATTGACTGACGtgtcaatatttatttatttattattattatcatttattattgtttgtggACCGCACACTTGAAATGTGAACTATGCGACAAGCATTTTTCTGTGAATGATTTAacagcaactttttttttaactgatacaaaatattttaatatatgcttttttatttatttgtttttttgggggttAATTTGTGTTTTGGATGTAGGAAgggtcagtgtaatgtttagcAGAACTGTATCAAGCTAcattcaaaaatagaaaattgtgtataaaacttaaaaaaaaaaaaatctgttcagaagAAGAAATGGGTTTTCATACAATTTTTCaattacctatttttttttcatttcagcctttctaaacagaatttcaagaaaaGTAAAAAGGGGAATCTTCTCTCAGTTTTTAGATTTGTccagttttgtattttataaaaaaaatgattgtataatccaacttgcaaaatgcaaaatggaaaaatctgaaaataaagaaaaaaatatagatatattttttttttttcttgaaattccAACTGCGAGGGGCAGAGAtggaataaaaattaaaattgaaaaaaaaatatttattgtacagtttttacatgcaattttctgttttttgcatttagcctaCAGTGATCAGAAAGTTACACAGATCTAAGAAGCCAATGTCAGGCTAATGCATCAGTATATCCATAGTACAGTatgcttagcattagcttatatacttttttttttttttcttttttttttttataatccaaTTTATTTTCTgctactgtttcatttttacagtttggATTTGAAGGTATGTTTTAAGGTCACACTGCAGTACTGCAGTCACatcatttcacatttttaatttatatttttttttaaatctgcagTGAATGAATTGGCTTGCATTTTAAAGATTGCTGATATTGGTTGATGTCACTTAAATACaggtttttactgtattttactgttaCTGCAGtctgtacatactgtatactgtttatacaacttttttttgtttctcttccgAACAGCCAATCAaggtctaaaataataataatgtttaaagaGCGTGCACAAGCTGAGCAGTTCTTTCCAAAGAttagtttattttcttgtaGTTTTCTGAGAACACTGTGGCTCTCCTGAGAATGACAAAATGGAACATGCAGCACAGCAAACGTGAACCATTTGagctttttcctgtttttttttttttattattattataaaaatgttttttttttttgctgtacatACACTCCAGTCAGTGTATGTCCTTATACATtgcctttttattgttttttttttttgtttgttttttttgtatacgCATTGTCATGAACACAATCATTAGACTGACAAACGCTGGGAAGATGCTATGAAGGCACAAAACTATTGTACACAATATTACACTGTATAAAATTTCAATTGTAGCCAAAGTCAAGCCAAACCTAGGCTTTAATTTCtattcttctttcttttattttcttttcttttttttatcagcccATTGACTCATTGTAAAAGACTGATATTTGCATTTGTAAAACAATAGTTTACACAATGGTGCTGTatagataaatgaatgaatgaatgaatgaatgaattaactCTTTACTAGCAATCCATTTGCTGTTCACCATTTCActgtgattgattgattgattgattgtgcaCCATCTCAAAATGTAactcattttacattatttatttaggatatttaaactaaatattgGCACAGTTATCATTGAATTTAACTTTGGTAAGCACAACAAAAAACTGTAACACACTGATGTTAATTAGCTTGCTAAGTTGTGTAGCAATTATTTTCTGGCTTGAATgattttcattaatatattgaCCAAAATGAAAAGATAGgagttattttttaaacttgacAGAAGTTGTTTATTTGCTGTAATTTATCAACATTttgaatgtatgtatttattaacgAACGTGATGCTGTATTTATACTCGGATGATGATACTCTGATTCTCTTGCACCGTTGGAAAACTGAAAGAGTTTGTATTTCTTTGAATTTGCACTGGAAATGTGTTCCTGGTTTGAACGTTGGGTTGTTTTGTACGCTTGCTGTcttgatattaaacattttttaaaatgtgaa

Function

symbol description
zgc:101564 Predicted to be active in cytosol. Orthologous to several human genes including FAM72A (family with sequence similarity 72 member A).
fam72a Predicted to act upstream of or within negative regulation of brain-derived neurotrophic factor-activated receptor activity and positive regulation of apoptotic process. Located in cytosol and intracellular membrane-bounded organelle.

NR:

description
PREDICTED: protein FAM72A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261939 False 441 lncRNA 0.32 2 26711253 26719418
TU261941 False 538 lncRNA 0.26 2 26713692 26718554
XM_007247751.3 True 3935 mRNA 0.35 4 26718077 26724106

Neighbor

gene id symbol gene type direction distance location
LOC103035733 foxp4,LOC107739274,LOC107728618 coding downstream 361548 26114437 ~ 26349705 (-)
LOC103036054 mdfi,LOC103036054,LOC107548515,LOC107675846,LOC107728619 coding downstream 625775 26008796 ~ 26085478 (-)
ppfia4 ppfia4 coding downstream 940534 25587726 ~ 25770719 (-)
LOC103039085 NA coding downstream 1156566 25508488 ~ 25554687 (-)
LOC103038137 NA coding downstream 1174250 25527642 ~ 25537003 (-)
il10 NA coding upstream 405046 27129152 ~ 27133856 (-)
LOC103047370 NA coding upstream 423608 27147714 ~ 27153326 (-)
prelp prelp coding upstream 438641 27162747 ~ 27170995 (-)
LOC103032351 LOC108435192 coding upstream 472945 27197051 ~ 27210316 (-)
LOC103031188 chia,LOC108435172,LOC108255197,LOC108255198 coding upstream 550551 27274657 ~ 27290319 (-)
G193020 NA non-coding downstream 92275 26618746 ~ 26618978 (-)
G193018 NA non-coding downstream 133269 26577732 ~ 26577984 (-)
G193017 NA non-coding downstream 217691 26493203 ~ 26493562 (-)
G193014 NA non-coding downstream 276471 26434508 ~ 26434782 (-)
G193005 NA non-coding downstream 414024 26227608 ~ 26297229 (-)
G193049 NA non-coding upstream 152264 26876370 ~ 26876620 (-)
G193056 NA non-coding upstream 161730 26885836 ~ 26899814 (-)
G193062 NA non-coding upstream 174165 26898271 ~ 26899404 (-)
G193085 NA non-coding upstream 203002 26927108 ~ 26999073 (-)
G193110 NA non-coding upstream 413977 27138083 ~ 27139236 (-)
LOC111195415 tfeb other downstream 832600 25874910 ~ 25878653 (-)
G192815 mdm4 other downstream 1493703 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 2605355 24039246 ~ 24105898 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 3652448 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 3907611 22786163 ~ 22803642 (-)
G193097 NA other upstream 307557 27031663 ~ 27033089 (-)
LOC111195340 NA other upstream 666688 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 700936 27425042 ~ 27701331 (-)
tmem167b tmem167b other upstream 1286885 28010991 ~ 28015612 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other upstream 1470273 28194379 ~ 28213070 (-)

Expression


Co-expression Network