LOC111195340


Basic Information

Item Value
gene id LOC111195340
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27390794 ~ 27391571 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU262159
tttcaaagtaactataccatcactgctctAGGCTGTGTCATATATGCTTATCAGTTTAACCCTCTATTGTTTCCTGGGCTTGTAGAGCTGATGTCATGTAGGATTTTCTGGTATGAGAGAGGCAGTCAGACAGCTTGTCTTTCTTAAAGCTTTTctgaattcgttttttttccgTTATGATCAACAGGAAGCCAGGTATGCGCCGGTCGCTGTCGACGTCCAGCAGGGATGAAATTATTCGCTGGTTTAAAGAGGAGCAGACCCTCAGAGTTTGTTTACAGCAAGGCGAGAGTCGAGTTGCCCCCTGGTTTCATGGTATTATTACTCGTGAGGAGGCGGAGGATTTGCTGAAGTCAGGCAGCGCTGGAAGCTTCCTGGTCCGTGTTAGCGAGAGGATCTTTGGATATGTTCTTTCTTACAGAACATAgtctatgactcctgcaagtttgggcaaatttcactgtattgtttattttatattaattgtttttttt
>XM_022682148.1
taactaagttttttttaaggagtaatcagtaatcggattactttttcaaagtaactataccatcactgctctAGGCTGTGTCATATATGCTTATCAGTTTAACCCTCTATTGTTTCCTGGGCTTGTAGAGCTGATGTCATGTAGGATTTTCTGGTATGAGAGAGGCAGTCAGACAGCTTGTCTTTCTTAAAGCTTTTctgaattcgttttttttccgTTATGATCAACAGGAAGCCAGGTATGCGCCGGTCGCTGTCGACGTCCAGCAGGGATGAAATTATTCGCTGGTTTAAAGAGGAGCAGACCCTCAGAGTTTGTTTACAGCAAGGCGAGAGTCGAGTTGCCCCCTGGTTTCATGGTATTATTACTCGTGAGGAGGCGGAGGATTTGCTGAAGTCAGGCAGCGCTGGAAGCTTCCTGGTCCGTGTTAGCGAGAGGATCTTTGGATATGTTCTTTCTTACAGAACATAgtctatgactcctgcaagtttgggcaaatttcactgtattgtttattttatattaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262159 False 494 lncRNA 0.43 2 27390794 27391528
XM_022682148.1 True 526 mRNA 0.42 2 27390805 27391571

Neighbor

gene id symbol gene type direction distance location
LOC103029919 NA coding downstream 86854 27301296 ~ 27303940 (-)
LOC103046766 LOC108436454 coding downstream 91223 27296666 ~ 27299571 (-)
LOC107197599 NA coding downstream 97985 27287220 ~ 27292809 (-)
LOC103031188 chia,LOC108435172,LOC108255197,LOC108255198 coding downstream 100475 27274657 ~ 27290319 (-)
LOC103032351 LOC108435192 coding downstream 180478 27197051 ~ 27210316 (-)
bcl2l15 NA coding upstream 53908 27445479 ~ 27453376 (-)
kif21b kif21b coding upstream 365656 27757227 ~ 27874978 (-)
LOC103045240 LOC108436365,LOC107592563,LOC107699336,LOC107680449,LOC107751004,LOC108254807 coding upstream 520104 27911675 ~ 27955052 (-)
LOC103028137 LOC103028137,LOC108436315,LOC104939458,LOC108254806,LOC103386138 coding upstream 570796 27962367 ~ 28008609 (-)
b3galt6 b3galt6,LOC107592565,LOC107680432,LOC107699339,LOC107555998 coding upstream 632766 28024337 ~ 28028670 (-)
G193198 NA non-coding downstream 646 27389723 ~ 27390148 (-)
LOC111195418 NA non-coding downstream 3890 27384262 ~ 27386904 (-)
G193194 NA non-coding downstream 3894 27383131 ~ 27386900 (-)
LOC111195339 NA non-coding downstream 6753 27382980 ~ 27384041 (-)
G193185 NA non-coding downstream 20361 27370175 ~ 27370433 (-)
G193200 NA non-coding upstream 9266 27400837 ~ 27401642 (-)
G193223 NA non-coding upstream 97294 27488865 ~ 27506529 (-)
G193226 NA non-coding upstream 101479 27493050 ~ 27494923 (-)
G193367 NA non-coding upstream 332289 27723860 ~ 27724105 (-)
G193369 NA non-coding upstream 339432 27731003 ~ 27731662 (-)
G193097 NA other downstream 357705 27031663 ~ 27033089 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other downstream 666688 26711253 ~ 26724106 (-)
LOC111195415 tfeb other downstream 1512141 25874910 ~ 25878653 (-)
G192815 mdm4 other downstream 2173244 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 3284896 24039246 ~ 24105898 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 33471 27425042 ~ 27701331 (-)
tmem167b tmem167b other upstream 619420 28010991 ~ 28015612 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other upstream 802808 28194379 ~ 28213070 (-)
LOC111195343 LOC108434908 other upstream 1184536 28576107 ~ 28586222 (-)
G193541 NA other upstream 1205984 28597555 ~ 28598638 (-)

Expression


Co-expression Network